Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SPYOHK_RS08590 Genome accession   NZ_AFRY01000001
Coordinates   103952..104380 (+) Length   142 a.a.
NCBI ID   WP_002986548.1    Uniprot ID   -
Organism   Streptococcus pyogenes HKU QMH11M0907901     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 98952..109380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYOHK_RS08610 (SPYOHK_00410) - 101283..101648 (+) 366 WP_002986560.1 DUF1033 family protein -
  SPYOHK_RS08605 (SPYOHK_00415) comGA 101741..102679 (+) 939 WP_002987773.1 competence type IV pilus ATPase ComGA Machinery gene
  SPYOHK_RS08600 (SPYOHK_00420) comGB 102615..103649 (+) 1035 WP_223845212.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPYOHK_RS08595 (SPYOHK_00425) comGC 103651..103977 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  SPYOHK_RS08590 (SPYOHK_00430) comGD 103952..104380 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPYOHK_RS08585 (SPYOHK_00435) comGE 104337..104621 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE Machinery gene
  SPYOHK_RS08580 (SPYOHK_00440) comGF 104614..105048 (+) 435 WP_002987783.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPYOHK_RS08575 (SPYOHK_00445) comGG 105032..105358 (+) 327 WP_002987787.1 competence type IV pilus minor pilin ComGG -
  SPYOHK_RS08570 (SPYOHK_00450) comGH 105456..106409 (+) 954 WP_002987790.1 class I SAM-dependent methyltransferase Machinery gene
  SPYOHK_RS08565 (SPYOHK_00455) - 106468..107664 (+) 1197 WP_002987791.1 acetate kinase -
  SPYOHK_RS08560 (SPYOHK_00460) - 107851..108159 (+) 309 WP_002987795.1 hypothetical protein -
  SPYOHK_RS08555 (SPYOHK_00465) proC 108242..109012 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16310.04 Da        Isoelectric Point: 10.3481

>NTDB_id=53985 SPYOHK_RS08590 WP_002986548.1 103952..104380(+) (comGD) [Streptococcus pyogenes HKU QMH11M0907901]
MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTE
GNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQSLHSP

Nucleotide


Download         Length: 429 bp        

>NTDB_id=53985 SPYOHK_RS08590 WP_002986548.1 103952..104380(+) (comGD) [Streptococcus pyogenes HKU QMH11M0907901]
ATGAAAAAGCCCGTCTTAGCAATTAAAGCTTTTACTTTGCTTGAAACTTTACTAAGTTTGTCAGTGATGAGTTTCATTAT
ATTGGGATTGTCTGTACCAGTGACAAAAAGCTATCAAAAAGTAGAAGAGCATCTGTTTTTTAGCCATTTTGAACATTTGT
ATCGACATCAGCAAAAGTTAGCCATATTACAGCAAAAACAGCGCGTCTTGGATATTTCTTCAACAAAAATTGTTACAGAA
GGTAATAGCCTAACAGTTCCTAAATCAATAACAGTGAATCATCCTTATCGGTTAGTTATTGATCAGATGGGAGGCAACCA
TTCCTTAGCTAAAATTATTTTTGACATGACTGATCGACGCTTTAAATACCAATTTTATCTAGGGAGTGGGAATTATCAAA
AAACAAGTCAAAGCTTACATAGCCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

45.736

90.845

0.415
  comGD Streptococcus mutans UA140

45.736

90.845

0.415
  comGD/cglD Streptococcus mitis NCTC 12261

40.441

95.775

0.387
  comGD Streptococcus gordonii str. Challis substr. CH1

40.458

92.254

0.373
  comGD/cglD Streptococcus mitis SK321

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae Rx1

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae D39

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae R6

39.695

92.254

0.366

Multiple sequence alignment