Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   GGS_RS10420 Genome accession   NC_018712
Coordinates   2150360..2151136 (+) Length   258 a.a.
NCBI ID   WP_003054458.1    Uniprot ID   A0A9X5R320
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2145360..2156136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS10400 (GGS_1974) - 2147114..2148133 (+) 1020 WP_015017523.1 IS30 family transposase -
  GGS_RS10410 (GGS_1976) rlmH 2148356..2148835 (-) 480 WP_003057960.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  GGS_RS10415 (GGS_1977) htrA 2149048..2150271 (+) 1224 WP_003054444.1 trypsin-like peptidase domain-containing protein Regulator
  GGS_RS10420 (GGS_1978) spo0J 2150360..2151136 (+) 777 WP_003054458.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 29136.15 Da        Isoelectric Point: 10.3001

>NTDB_id=53986 GGS_RS10420 WP_003054458.1 2150360..2151136(+) (spo0J) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MTKELLIDLPIEDIVTNPYQPRIQFNQRELQDLATSIKSNGLIQPIIVRKSDIFGYELVAGERRLKASKMAGLKKVPAII
KKISTLESMQQAIVENLQRSNLNAIEEAKAYQLLVEKKHMTHDEIAKYMGKSRPYISNTLRLLQLPAPIIKAIEEGKISA
GHARALLTLTDEKEQLVYANRIKNEGLSVRQIEHMVTPKLKTTPTQKNKNIFITSLEDQLAQSLGLPAKIKLKSTQSGQL
LLPFANQEELNRIINKLL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=53986 GGS_RS10420 WP_003054458.1 2150360..2151136(+) (spo0J) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGACAAAAGAATTATTGATAGACCTACCAATTGAAGATATTGTTACAAATCCCTATCAGCCAAGGATACAATTTAATCA
AAGAGAACTCCAAGACCTAGCAACTTCTATTAAATCAAACGGCCTCATTCAACCTATTATTGTTCGAAAATCTGACATTT
TTGGCTATGAGTTAGTTGCTGGAGAACGACGACTTAAAGCTTCAAAAATGGCTGGTCTAAAAAAAGTTCCAGCTATCATC
AAGAAGATCTCTACACTCGAGAGCATGCAACAAGCTATAGTTGAAAATTTACAACGTTCTAACCTTAACGCTATCGAAGA
AGCTAAAGCCTATCAGTTATTGGTTGAAAAAAAACACATGACTCACGATGAGATTGCTAAATATATGGGAAAATCAAGAC
CTTATATTAGCAATACCTTACGTCTGTTACAACTCCCAGCACCTATCATTAAAGCAATTGAAGAAGGAAAAATTAGTGCG
GGACACGCGCGTGCTCTTCTCACACTAACCGACGAAAAGGAACAGTTAGTTTATGCTAATAGAATCAAAAATGAAGGGTT
AAGTGTACGACAAATTGAGCATATGGTAACTCCAAAACTCAAAACCACCCCTACCCAGAAAAATAAAAATATTTTTATCA
CTTCTTTAGAAGATCAGCTGGCCCAATCTCTAGGGCTACCAGCCAAAATCAAATTGAAATCAACTCAGAGTGGTCAATTG
CTGTTACCATTTGCTAATCAAGAGGAATTAAACAGAATTATCAACAAGTTGCTTTAG

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(9-96)

HTH domain found in ParB protein (HTH_ParB)

(148-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

57.198

99.612

0.57

Multiple sequence alignment