Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GGS_RS10030 Genome accession   NC_018712
Coordinates   2070599..2071312 (+) Length   237 a.a.
NCBI ID   WP_002982243.1    Uniprot ID   A0A9X5LXW4
Organism   Streptococcus dysgalactiae subsp. equisimilis RE378     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2065599..2076312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGS_RS10020 (GGS_1901) treC 2066669..2068297 (-) 1629 WP_002991331.1 alpha,alpha-phosphotrehalase -
  GGS_RS10025 (GGS_1902) treP 2068364..2070388 (-) 2025 WP_003059974.1 PTS system trehalose-specific EIIBC component -
  GGS_RS10030 (GGS_1903) treR 2070599..2071312 (+) 714 WP_002982243.1 trehalose operon repressor Regulator
  GGS_RS10035 - 2071594..2071860 (-) 267 WP_080562187.1 winged helix-turn-helix transcriptional regulator -
  GGS_RS10040 (GGS_1904) - 2072119..2072976 (+) 858 WP_037589784.1 VOC family protein -
  GGS_RS10045 (GGS_1905) yaaA 2073018..2073749 (+) 732 WP_015017496.1 peroxide stress protein YaaA -
  GGS_RS10050 (GGS_1906) nrdG 2073922..2074536 (-) 615 WP_003058750.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  GGS_RS10055 (GGS_1907) - 2074540..2075043 (-) 504 WP_003058815.1 GNAT family N-acetyltransferase -
  GGS_RS10060 (GGS_1908) - 2075052..2075987 (-) 936 WP_003058797.1 Gfo/Idh/MocA family oxidoreductase -
  GGS_RS11040 - 2076016..2076162 (-) 147 WP_003053094.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.78 Da        Isoelectric Point: 9.6226

>NTDB_id=53982 GGS_RS10030 WP_002982243.1 2070599..2071312(+) (treR) [Streptococcus dysgalactiae subsp. equisimilis RE378]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=53982 GGS_RS10030 WP_002982243.1 2070599..2071312(+) (treR) [Streptococcus dysgalactiae subsp. equisimilis RE378]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAGTACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCGCTTCTCACTAAGGCAG
GCCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAGCATCATCAGATCATGTTCCCCATCTCAGAACTAACT
AGCTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment