Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   JVB21_RS06360 Genome accession   NZ_CP070381
Coordinates   1260855..1261244 (-) Length   129 a.a.
NCBI ID   WP_205271689.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1254725..1261244 1260855..1261244 within 0


Gene organization within MGE regions


Location: 1254725..1261244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS06330 (JVB21_06330) tmk 1254725..1255360 (-) 636 WP_205271685.1 dTMP kinase -
  JVB21_RS06335 (JVB21_06335) yycF 1255540..1256241 (+) 702 WP_075524792.1 response regulator YycF -
  JVB21_RS06340 (JVB21_06340) - 1256234..1257658 (+) 1425 WP_205271686.1 ATP-binding protein -
  JVB21_RS06345 (JVB21_06345) - 1257775..1258587 (+) 813 WP_205271687.1 MBL fold metallo-hydrolase -
  JVB21_RS06350 (JVB21_06350) groL 1258644..1260272 (-) 1629 WP_205271688.1 chaperonin GroEL -
  JVB21_RS06355 (JVB21_06355) groES 1260355..1260639 (-) 285 WP_075524796.1 co-chaperone GroES -
  JVB21_RS06360 (JVB21_06360) ssbB 1260855..1261244 (-) 390 WP_205271689.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14700.76 Da        Isoelectric Point: 8.3988

>NTDB_id=539550 JVB21_RS06360 WP_205271689.1 1260855..1261244(-) (ssbB) [Lactococcus taiwanensis strain K_LL001]
MNKTMLIGRLTQNPEVTKTTNDKTYVRTTLAVNRRFKNEDGGRDADFIGIILWGKTAETLASYAKKGALISVEGEIRTHS
YMDKQNQKRYMTEVLALNYDLLESRATIALRENSAHTEKLMLEGEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=539550 JVB21_RS06360 WP_205271689.1 1260855..1261244(-) (ssbB) [Lactococcus taiwanensis strain K_LL001]
ATGAATAAAACAATGTTAATTGGTCGCCTTACTCAAAATCCAGAAGTTACCAAAACAACTAATGATAAAACTTATGTGAG
AACCACACTTGCAGTGAACCGACGCTTTAAAAATGAAGACGGGGGACGTGATGCTGATTTTATCGGGATCATTTTATGGG
GGAAGACGGCAGAAACGCTGGCTTCGTACGCTAAAAAAGGGGCTCTCATTTCAGTTGAAGGGGAGATTCGTACACATAGC
TACATGGACAAGCAAAATCAAAAACGTTATATGACAGAGGTGCTCGCTTTAAATTATGATTTGCTAGAAAGTCGAGCAAC
AATCGCCTTGCGGGAAAATTCAGCGCATACTGAAAAGTTGATGCTAGAAGGAGAAGAACTTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

74.419

100

0.744
  ssbB/cilA Streptococcus pneumoniae TIGR4

57.692

100

0.581
  ssbB/cilA Streptococcus mitis NCTC 12261

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae D39

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae R6

56.923

100

0.574
  ssbB/cilA Streptococcus mitis SK321

56.923

100

0.574
  ssbB Streptococcus sobrinus strain NIDR 6715-7

56.154

100

0.566
  ssbA Streptococcus mutans UA159

53.846

100

0.543