Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JVX96_RS27410 Genome accession   NZ_CP070343
Coordinates   5838001..5839230 (+) Length   409 a.a.
NCBI ID   WP_081267927.1    Uniprot ID   -
Organism   Variovorax sp. PDNC026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5833001..5844230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX96_RS27380 (JVX96_27380) cgtA 5833089..5834165 (-) 1077 WP_081267931.1 Obg family GTPase CgtA -
  JVX96_RS27385 (JVX96_27385) rpmA 5834237..5834497 (-) 261 WP_081267930.1 50S ribosomal protein L27 -
  JVX96_RS27390 (JVX96_27390) rplU 5834510..5834821 (-) 312 WP_057592097.1 50S ribosomal protein L21 -
  JVX96_RS27395 (JVX96_27395) - 5835005..5835997 (+) 993 WP_106937024.1 polyprenyl synthetase family protein -
  JVX96_RS27405 (JVX96_27405) pilB 5836241..5837974 (+) 1734 WP_081267928.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JVX96_RS27410 (JVX96_27410) pilC 5838001..5839230 (+) 1230 WP_081267927.1 type II secretion system F family protein Machinery gene
  JVX96_RS27415 (JVX96_27415) - 5839230..5840195 (+) 966 WP_106937023.1 A24 family peptidase -
  JVX96_RS27420 (JVX96_27420) coaE 5840207..5840815 (+) 609 WP_199851988.1 dephospho-CoA kinase -
  JVX96_RS27425 (JVX96_27425) - 5840885..5842378 (+) 1494 WP_106937022.1 MBOAT family protein -
  JVX96_RS27430 (JVX96_27430) - 5842380..5843414 (+) 1035 WP_081267924.1 hypothetical protein -
  JVX96_RS27435 (JVX96_27435) zapD 5843445..5844200 (+) 756 WP_081267923.1 cell division protein ZapD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44655.28 Da        Isoelectric Point: 9.7864

>NTDB_id=539262 JVX96_RS27410 WP_081267927.1 5838001..5839230(+) (pilC) [Variovorax sp. PDNC026]
MATVASSRSQPTHKEFVFEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKKIKPKDIAIFTRQLA
TMMKAGVPLMQSFDIVGRGNANASVAKLLNDIRSDVETGTSLSAAFRKFPKYFDNLYCNLVEAGEAAGILEDLLDRLATY
MEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAMSEFFVSYWWLIFGGLGGGI
YFFLQAWKRNERVQRVMDRALLRVPIFGALIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEV
STGTSLTAAMTNANLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=539262 JVX96_RS27410 WP_081267927.1 5838001..5839230(+) (pilC) [Variovorax sp. PDNC026]
ATGGCAACAGTGGCATCCTCCCGCTCCCAGCCCACACACAAGGAATTTGTCTTCGAGTGGGAAGGCAAGGACCGCAACGG
CAAGCTGGTGCGTGGCGAACTCCGGGCCGCCGGCGAAAACCAGGTGCAGGCCGCGCTGCGCCGCCAGGGCGTGCTGGCTT
CGAAGATCAAGAAGCGGCGGATGCGCTCGGGCAAGAAGATCAAGCCCAAGGACATTGCCATCTTCACGCGCCAGCTGGCA
ACGATGATGAAAGCCGGCGTGCCGCTGATGCAGTCCTTCGACATCGTTGGGCGCGGCAACGCGAACGCGAGCGTGGCCAA
GCTACTGAACGACATCCGCAGCGACGTGGAAACGGGTACGTCCCTTTCGGCGGCGTTCCGCAAGTTTCCGAAGTACTTCG
ACAACCTGTACTGCAACCTGGTGGAGGCCGGCGAGGCCGCCGGTATCCTGGAAGACCTGCTGGACCGGCTGGCCACGTAC
ATGGAAAAGACCGAGGCGATCAAGTCCAAGATCAAGTCGGCATTGATGTACCCGACTTCGGTGGTCGTGGTGGCTTTCGT
GGTGGTGGCCATCATCATGATCTTCGTGATTCCGGCGTTCAAGCAGGTGTTCACCTCGTTCGGCGCCGACTTGCCGGCAC
CCACGCTGTTCGTGATGGCGATGAGCGAGTTCTTCGTTTCGTACTGGTGGCTGATCTTCGGGGGGCTCGGCGGAGGCATC
TATTTCTTTCTGCAGGCCTGGAAGCGCAACGAACGCGTGCAGAGAGTCATGGACCGGGCGCTGCTGAGGGTGCCGATCTT
CGGCGCGCTGATCGAAAAATCCTGCGTGGCGCGCTGGACCCGCACGCTGGCAACGATGTTCGCCGCCGGCGTGCCGCTGG
TCGAAGCGCTGGACTCCGTGGGCGGAGCCTCGGGCAATACCGTCTACGGGGACGCCACGGCCAAGATCCAGCAGGAAGTC
TCGACCGGCACCAGCCTCACGGCGGCCATGACCAACGCCAACCTGTTCCCCTCGATGGTCATCCAGATGACCGCGATCGG
CGAGGAATCCGGCTCCATCGACCACATGCTGGGCAAGGCGGCCGACTTCTATGAATCGGAAGTGGACGACATGGTCGCGG
GCCTCTCGAGCCTGATGGAGCCCATCATCATCGTGTTCCTGGGCACCATCATCGGCGGCATCGTGGTCTCGATGTACCTG
CCCATCTTCAAGCTCGGCCAGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.465

98.778

0.528
  pilG Neisseria gonorrhoeae MS11

53.401

97.066

0.518
  pilG Neisseria meningitidis 44/76-A

53.149

97.066

0.516
  pilC Acinetobacter baylyi ADP1

51.759

97.311

0.504
  pilC Legionella pneumophila strain ERS1305867

50

97.311

0.487
  pilC Acinetobacter baumannii D1279779

49.622

97.066

0.482
  pilC Vibrio cholerae strain A1552

41.206

97.311

0.401
  pilC Vibrio campbellii strain DS40M4

39.702

98.533

0.391
  pilC Thermus thermophilus HB27

37.831

100

0.384