Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   B5T_RS19710 Genome accession   NC_018691
Coordinates   4400002..4402152 (-) Length   716 a.a.
NCBI ID   WP_014996282.1    Uniprot ID   K0CKY2
Organism   Alloalcanivorax dieselolei B5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4395002..4407152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5T_RS19695 (B5T_03967) - 4396997..4398349 (-) 1353 WP_014996279.1 SPOR domain-containing protein -
  B5T_RS19700 (B5T_03968) aroB 4398336..4399418 (-) 1083 WP_014996280.1 3-dehydroquinate synthase -
  B5T_RS19705 (B5T_03969) aroK 4399469..4400005 (-) 537 WP_041717145.1 shikimate kinase AroK -
  B5T_RS19710 (B5T_03970) pilQ 4400002..4402152 (-) 2151 WP_014996282.1 type IV pilus secretin PilQ Machinery gene
  B5T_RS19715 (B5T_03971) - 4402173..4402706 (-) 534 WP_014996283.1 pilus assembly protein PilP -
  B5T_RS19720 (B5T_03972) - 4402728..4403426 (-) 699 WP_014996284.1 type 4a pilus biogenesis protein PilO -
  B5T_RS19725 (B5T_03973) - 4403413..4403997 (-) 585 WP_014996285.1 PilN domain-containing protein -
  B5T_RS19730 (B5T_03974) pilM 4403994..4405061 (-) 1068 WP_148279306.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 78079.42 Da        Isoelectric Point: 4.5897

>NTDB_id=53756 B5T_RS19710 WP_014996282.1 4400002..4402152(-) (pilQ) [Alloalcanivorax dieselolei B5]
MKICNAIKNRFAPRRWGIRVLAVLACCTASLASAATITALDANMLPGDGMEVRVRFEGAAPEVKGYSIERPARIALDLVG
ADSALKTRQHNLGTGNARSVTVVEAKNRTRLIFNLDQLTGYSTEVDGQELVVVLGRDRAPASDPARADQEAAAAPLQSAQ
ESIRNIDFRRGSDGEGRVVVTLSKPSIPVDVKEEGGRIQARFVGAGVGNELVRRLDVTDFATPVQYVETRTDDGSTVITI
EPTGSWEYLAYQADNEFSINIKPLTRGEAERKKRESFKYTGEKLSLNFQDIEVRSVLQLIADFTELNLVASDTVAGKITL
RLQSVPWDQALDLILKTKGLDKRKVGNVLLVAPADEIAAREQLELESQKKIASLAPLRTEFISINYARAEELKTLITGES
GATALISERGSVSVDQRTNTLIIQDTVAKLQEIRDLIQQLDIPVQQVLIEARVVVATTDLSDEFGVRWGGLGYDGNSLAR
DGRSMAISGRLTSLRELHYANVDRDDDGSLGEMEEFDEDTNNDMIVDMGVDSSDATRFAIGFTSLSSGLIELELSALESE
GRGELVATPKVLTADQQPAVIASGQQIPFNVATSSGATAVEFIEAELRLEVTPQVTPEGDVIMQLKVNNDALGSDLDNPT
ISTNRVETTVLVNDGETVVLGGIFQQEQINSLIKTPFLGDIPWLGALFRKKVKRDSKQELLIFITPRLVKETMARR

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=53756 B5T_RS19710 WP_014996282.1 4400002..4402152(-) (pilQ) [Alloalcanivorax dieselolei B5]
ATGAAGATCTGCAATGCAATAAAAAACCGATTCGCTCCCCGGCGCTGGGGAATCCGGGTGCTGGCGGTGCTGGCCTGCTG
CACCGCCTCACTGGCGTCGGCGGCCACCATTACCGCCCTCGACGCCAACATGCTGCCGGGGGATGGCATGGAAGTGAGAG
TGCGCTTTGAGGGCGCCGCGCCGGAGGTGAAGGGCTACAGCATCGAACGTCCGGCCCGCATCGCTCTCGACCTGGTGGGC
GCGGACAGTGCCCTGAAAACCCGTCAGCACAATCTCGGCACCGGCAATGCCCGCAGTGTCACGGTGGTGGAGGCCAAGAA
CCGCACCCGGCTGATCTTCAATCTGGATCAGCTGACCGGTTACAGCACCGAAGTGGATGGACAGGAACTGGTGGTGGTGC
TCGGCCGCGACCGTGCGCCGGCCAGCGATCCGGCCAGGGCGGACCAGGAAGCCGCCGCCGCGCCGTTACAGAGTGCGCAG
GAGAGCATTCGCAACATCGATTTCCGTCGCGGCAGTGACGGCGAAGGCCGGGTCGTGGTGACGCTGTCCAAACCGTCCAT
TCCGGTGGATGTGAAGGAAGAAGGCGGTCGTATCCAGGCGCGCTTCGTCGGCGCCGGGGTCGGCAATGAACTGGTGCGTC
GTCTCGACGTCACCGACTTCGCCACGCCGGTGCAGTATGTGGAAACCCGCACCGATGACGGCAGCACGGTGATCACCATC
GAACCCACCGGCAGTTGGGAATATCTGGCCTATCAGGCGGACAACGAGTTCAGCATCAATATCAAGCCGCTCACCCGTGG
CGAAGCGGAACGCAAGAAGCGTGAGTCCTTCAAGTACACCGGAGAGAAGCTGTCACTGAACTTCCAGGACATCGAGGTGC
GTTCGGTGCTGCAGCTGATCGCCGATTTCACCGAATTGAATCTGGTGGCGTCCGACACGGTGGCGGGCAAGATTACTCTG
CGGCTGCAGAGCGTGCCGTGGGATCAGGCTCTGGATCTGATTCTCAAGACCAAGGGGCTGGATAAGCGCAAGGTGGGCAA
TGTGCTGCTGGTGGCGCCGGCGGACGAGATCGCCGCGCGCGAACAACTGGAACTGGAAAGCCAGAAGAAGATCGCCTCAC
TGGCACCGTTGCGCACGGAGTTCATCAGCATCAACTACGCCCGCGCGGAGGAACTGAAGACGCTGATTACCGGGGAAAGC
GGTGCCACCGCGCTGATCAGCGAGCGCGGCTCGGTGTCCGTGGACCAGCGCACCAATACCCTGATCATCCAGGACACCGT
GGCCAAGCTGCAGGAGATCCGTGATCTGATCCAGCAACTGGACATTCCGGTCCAGCAGGTGCTGATCGAGGCCCGGGTGG
TGGTGGCCACCACCGATCTGTCCGATGAGTTCGGGGTGCGTTGGGGCGGTCTGGGTTACGACGGCAATTCTCTCGCCAGG
GATGGCCGCTCCATGGCGATTTCCGGCCGGCTCACTTCCCTGCGGGAGCTGCATTACGCCAACGTCGACCGTGATGACGA
CGGCTCCCTGGGGGAAATGGAGGAATTCGACGAGGACACCAACAACGACATGATCGTCGACATGGGGGTGGATTCCTCCG
ATGCCACCCGCTTCGCCATCGGCTTCACCTCGCTGAGTTCCGGACTGATCGAACTGGAGCTGTCGGCGCTGGAATCCGAG
GGGCGGGGGGAACTGGTGGCCACGCCCAAGGTGCTCACCGCCGATCAGCAACCGGCGGTGATCGCCTCCGGTCAGCAGAT
CCCGTTCAACGTGGCCACCTCCTCCGGGGCCACGGCGGTGGAGTTCATCGAAGCGGAGCTGCGCCTGGAAGTGACGCCGC
AGGTGACCCCGGAAGGGGACGTGATCATGCAGCTCAAGGTCAATAACGATGCCCTGGGCTCGGATCTGGACAACCCCACC
ATCAGTACCAACCGGGTTGAGACCACGGTGTTGGTGAATGACGGCGAAACCGTGGTTTTGGGCGGCATTTTCCAGCAGGA
ACAGATAAACTCCCTGATCAAAACCCCCTTCCTGGGTGATATTCCCTGGCTGGGAGCCCTGTTCCGCAAGAAAGTGAAGC
GTGACAGCAAGCAGGAATTGCTGATATTCATTACGCCACGCTTGGTGAAAGAGACAATGGCCCGTCGGTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(556-710)

Secretin and TonB N terminus short domain (STN)

(307-353)

Bacterial type II/III secretion system short domain (Secretin_N)

(380-446)

AMIN domain (AMIN)

(51-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0CKY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

48.88

99.721

0.487
  comQ Acinetobacter baylyi ADP1

41.851

100

0.423
  pilQ Acinetobacter baumannii strain A118

40.847

100

0.418
  pilQ Acinetobacter baumannii D1279779

40.847

100

0.418
  pilQ Legionella pneumophila strain ERS1305867

38.338

95.81

0.367
  pilQ Legionella pneumophila strain Lp02

37.807

96.788

0.366

Multiple sequence alignment