Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   LIO32_RS00320 Genome accession   NZ_CP085087
Coordinates   54947..55846 (+) Length   299 a.a.
NCBI ID   WP_074389615.1    Uniprot ID   -
Organism   Streptococcus suis strain Ssuis_MA2     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49947..60846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO32_RS00295 - 50034..51746 (+) 1713 WP_074389012.1 ABC transporter ATP-binding protein -
  LIO32_RS00300 - 51848..52021 (+) 174 WP_011921669.1 hypothetical protein -
  LIO32_RS00305 ruvB 52316..53317 (+) 1002 WP_024405856.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LIO32_RS00310 - 53317..54063 (+) 747 WP_024405857.1 GNAT family N-acetyltransferase -
  LIO32_RS00315 - 54065..54700 (+) 636 WP_024405858.1 HAD-IA family hydrolase -
  LIO32_RS00320 comR 54947..55846 (+) 900 WP_074389615.1 helix-turn-helix domain-containing protein Regulator
  LIO32_RS00325 - 56472..57410 (-) 939 WP_011921674.1 IS4 family transposase -
  LIO32_RS00330 - 57550..58770 (+) 1221 WP_074389014.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  LIO32_RS00335 - 58961..60484 (+) 1524 WP_024405860.1 quinol oxidase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35431.38 Da        Isoelectric Point: 4.6492

>NTDB_id=537263 LIO32_RS00320 WP_074389615.1 54947..55846(+) (comR) [Streptococcus suis strain Ssuis_MA2]
MNDKEFGQRVRQLRESASMTREQFCDDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLK
FDVLRTPTYGNEDLAEKRDAMMTEIYDDYYDELPEEEKIAIDAIQSRIDTLESGTAGFGKEILEDYFEQIFRKRKYELND
LLIVRLHLEYVRLSSCDSEIFRQFLKIIEHLHEQINIINSNDLFVLRDTLLSCVNILGSKKYYEPIPKIFDSVDKIIQLT
QDFQKKPIVSVLKWKYALFVDKDRDEAEKHYLDAVLFAKLIENRELEQKIEEDWRVDNQ

Nucleotide


Download         Length: 900 bp        

>NTDB_id=537263 LIO32_RS00320 WP_074389615.1 54947..55846(+) (comR) [Streptococcus suis strain Ssuis_MA2]
ATGAACGATAAGGAATTTGGACAGCGTGTACGTCAATTACGAGAATCTGCTAGTATGACACGTGAACAGTTTTGTGACGA
TGAACTGGAACTCTCTGTGCGCCAATTAACTCGTATTGAAGCAGGTGCTTCCAAGCCGACTTTTTCAAAGATTCAGTATA
TTGCAACTCGTTTAGGTATGGGACTTTACGAGCTTATGCCAGATTATGTATCTTTACCCGAAAGATATTCCAAGCTGAAG
TTTGATGTGCTTCGCACCCCAACTTATGGTAATGAAGATTTGGCGGAAAAGCGAGATGCCATGATGACAGAAATCTATGA
CGATTATTATGATGAATTGCCTGAGGAGGAGAAGATAGCAATAGATGCGATTCAATCACGAATTGATACTTTAGAGTCAG
GTACAGCAGGCTTTGGAAAAGAGATACTGGAAGACTACTTTGAACAAATTTTTCGCAAACGAAAGTATGAATTGAATGAT
TTGTTGATTGTTAGGCTCCATCTTGAATATGTTAGGTTATCTAGCTGTGATTCAGAAATATTTAGACAGTTTTTGAAAAT
TATAGAGCATTTACATGAGCAAATCAATATCATCAACTCAAATGATTTATTTGTTTTACGAGACACGCTATTATCTTGTG
TAAATATATTAGGAAGTAAAAAATATTACGAACCAATACCAAAGATATTTGACAGTGTAGATAAGATTATACAGTTGACA
CAAGATTTTCAGAAAAAGCCCATTGTTAGTGTATTAAAATGGAAATATGCACTTTTTGTGGATAAGGATCGGGATGAGGC
AGAAAAGCATTATCTAGATGCGGTGCTATTTGCAAAATTGATAGAAAATAGAGAGTTAGAACAGAAGATTGAAGAAGATT
GGAGAGTTGACAATCAATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(73-294)

Helix-turn-helix domain (HTH_31)

(5-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

99.666

100

0.997
  comR Streptococcus suis 05ZYH33

99.666

100

0.997
  comR Streptococcus suis D9

62.458

100

0.629
  comR Streptococcus mutans UA159

43.813

100

0.438
  comR Streptococcus pyogenes MGAS315

37.374

99.331

0.371