Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE/cglE   Type   Machinery gene
Locus tag   I6K87_RS06465 Genome accession   NZ_CP069892
Coordinates   1321083..1321376 (-) Length   97 a.a.
NCBI ID   WP_126406234.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1316083..1326376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS06445 (I6K87_06445) - 1318088..1319287 (-) 1200 WP_003028479.1 acetate kinase -
  I6K87_RS06450 (I6K87_06450) comYH 1319334..1320287 (-) 954 WP_003039058.1 class I SAM-dependent methyltransferase Machinery gene
  I6K87_RS06455 (I6K87_06455) comGG 1320355..1320681 (-) 327 WP_259334802.1 competence type IV pilus minor pilin ComGG -
  I6K87_RS06460 (I6K87_06460) comGF/cglF 1320662..1321099 (-) 438 WP_204982485.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6K87_RS06465 (I6K87_06465) comGE/cglE 1321083..1321376 (-) 294 WP_126406234.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6K87_RS06470 (I6K87_06470) comYD 1321348..1321776 (-) 429 WP_037566697.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6K87_RS06475 (I6K87_06475) comYC 1321736..1322053 (-) 318 WP_003028473.1 competence type IV pilus major pilin ComGC Machinery gene
  I6K87_RS06480 (I6K87_06480) comYB 1322050..1323072 (-) 1023 WP_180363191.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6K87_RS06485 (I6K87_06485) comYA 1323014..1323955 (-) 942 WP_003028470.1 competence type IV pilus ATPase ComGA Machinery gene
  I6K87_RS06490 (I6K87_06490) - 1324025..1324390 (-) 366 WP_022525291.1 DUF1033 family protein -
  I6K87_RS06495 (I6K87_06495) glnA 1324575..1325921 (-) 1347 WP_022525292.1 type I glutamate--ammonia ligase -
  I6K87_RS06500 (I6K87_06500) - 1325960..1326319 (-) 360 WP_003028467.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10940.90 Da        Isoelectric Point: 10.2691

>NTDB_id=537264 I6K87_RS06465 WP_126406234.1 1321083..1321376(-) (comGE/cglE) [Streptococcus anginosus strain FDAARGOS_1357]
MENLRKQRVRGTILLEALLALAVFATIVTLLLGQIHQSRKAENDLLREEEVLRVAKMALQIKQSHLTMNGIEVRVETSQQ
GIQIYHGKELILGVQGK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=537264 I6K87_RS06465 WP_126406234.1 1321083..1321376(-) (comGE/cglE) [Streptococcus anginosus strain FDAARGOS_1357]
ATGGAAAATTTAAGAAAACAACGCGTTAGAGGAACAATTTTATTAGAGGCGCTGCTGGCTTTGGCTGTTTTTGCGACAAT
TGTGACCCTGTTGTTGGGACAAATTCACCAGTCTCGAAAAGCAGAAAATGACTTGCTTAGAGAAGAAGAAGTTTTAAGGG
TAGCTAAAATGGCTTTGCAGATAAAGCAAAGCCATTTGACAATGAACGGTATTGAAGTGCGTGTTGAAACAAGTCAACAA
GGTATTCAAATTTATCATGGGAAGGAGTTGATTCTCGGTGTTCAAGGCAAATAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE/cglE Streptococcus pneumoniae Rx1

54.348

94.845

0.515
  comGE/cglE Streptococcus pneumoniae D39

54.348

94.845

0.515
  comGE/cglE Streptococcus pneumoniae R6

54.348

94.845

0.515
  comGE/cglE Streptococcus pneumoniae TIGR4

54.348

94.845

0.515
  comGE/cglE Streptococcus mitis NCTC 12261

53.261

94.845

0.505
  comGE/cglE Streptococcus mitis SK321

53.261

94.845

0.505
  comYE Streptococcus mutans UA140

42.424

100

0.433
  comYE Streptococcus mutans UA159

42.424

100

0.433