Detailed information NTG0537262

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: LIO32_RS00305
• Genome accession: NZ_CP085087
• Coordinates: 52316..53317 (+)
• Length: 333 a.a.
• NCBI ID: WP_024405856.1
• Uniprot ID: -
• Organism: Streptococcus suis strain Ssuis_MA2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 47316..58317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIO32_RS00285	-	48593..49252 (+)	660	Protein_37	ATP-binding cassette domain-containing protein	-
LIO32_RS00290	-	49258..50031 (+)	774	WP_012775420.1	membrane protein	-
LIO32_RS00295	-	50034..51746 (+)	1713	WP_074389012.1	ABC transporter ATP-binding protein	-
LIO32_RS00300	-	51848..52021 (+)	174	WP_011921669.1	hypothetical protein	-
LIO32_RS00305	ruvB	52316..53317 (+)	1002	WP_024405856.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
LIO32_RS00310	-	53317..54063 (+)	747	WP_024405857.1	GNAT family N-acetyltransferase	-
LIO32_RS00315	-	54065..54700 (+)	636	WP_024405858.1	HAD-IA family hydrolase	-
LIO32_RS00320	comR	54947..55846 (+)	900	WP_074389615.1	helix-turn-helix domain-containing protein	Regulator
LIO32_RS00325	-	56472..57410 (-)	939	WP_011921674.1	IS4 family transposase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37558.04 Da
• Isoelectric Point: 4.4673

>NTDB_id=537262 LIO32_RS00305 WP_024405856.1 52316..53317(+) (ruvB) [Streptococcus suis strain Ssuis_MA2]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLAALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLSTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=537262 LIO32_RS00305 WP_024405856.1 52316..53317(+) (ruvB) [Streptococcus suis strain Ssuis_MA2]
ATGACAAATCGAATTTTAGACATGGAACAAATGCAGGATGAGGAGTACGTAGAACGTACCCTGCGTCCGCAGAAATTAAA
TGAATACATCGGTCAGGACAAGGTCAAGGACCAGCTGAAAATCTTTATCGAGGCGGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACGCTTCTTTTTGGCCCTCCGGGTCTGGGGAAAACCACCATGGCCTTTGTCATTGCCAACGAACTGGGCGTTAAT
ATCAAGCAGACCAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGCGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCTATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAGGATTTCTACATCG
ACATCATGATTGGGGCAGGGGAGGCCAGTCGCTCCGTGCATTTGGAGTTACCACCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCCCTGCGGGCCCGTTTTGGGATTACCGGGCATATGGAGTATTATGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACGGCGGATATCTTTGATATGGAGATTACTCATGAAGCTGCTATTGAGCTGGCTCGTCGGT
CTCGTGGAACTCCCCGTATCGCCAACCGTCTGCTCAAGCGGGTGCGGGATTTTGCTCAGATTATGGGTGACGGCCTGATT
GACGATAGCATTACGGACAAGGCTCTGACCATGCTGGACGTGGACCGAGAGGGGCTGGACTATGTGGACCAGAAGATTCT
CCGCACCATGATTGAGATGTACGGCGGCGGTCCCGTCGGCCTCAGCACCCTGTCGGTCAATATCGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAGCCCTACCTGATTCAGCAGGGCTTCCTCATGCGGACACGGACGGGGCGGGTTGCGACAGCC
AAGGCCTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae R6	89.728	99.399	0.892
ruvB	Streptococcus pneumoniae D39	89.728	99.399	0.892
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.896	97.898	0.577
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474