Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   I6K87_RS06480 Genome accession   NZ_CP069892
Coordinates   1322050..1323072 (-) Length   340 a.a.
NCBI ID   WP_180363191.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1317050..1328072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS06445 (I6K87_06445) - 1318088..1319287 (-) 1200 WP_003028479.1 acetate kinase -
  I6K87_RS06450 (I6K87_06450) comYH 1319334..1320287 (-) 954 WP_003039058.1 class I SAM-dependent methyltransferase Machinery gene
  I6K87_RS06455 (I6K87_06455) comGG 1320355..1320681 (-) 327 WP_259334802.1 competence type IV pilus minor pilin ComGG -
  I6K87_RS06460 (I6K87_06460) comGF/cglF 1320662..1321099 (-) 438 WP_204982485.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6K87_RS06465 (I6K87_06465) comGE/cglE 1321083..1321376 (-) 294 WP_126406234.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6K87_RS06470 (I6K87_06470) comYD 1321348..1321776 (-) 429 WP_037566697.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6K87_RS06475 (I6K87_06475) comYC 1321736..1322053 (-) 318 WP_003028473.1 competence type IV pilus major pilin ComGC Machinery gene
  I6K87_RS06480 (I6K87_06480) comYB 1322050..1323072 (-) 1023 WP_180363191.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6K87_RS06485 (I6K87_06485) comYA 1323014..1323955 (-) 942 WP_003028470.1 competence type IV pilus ATPase ComGA Machinery gene
  I6K87_RS06490 (I6K87_06490) - 1324025..1324390 (-) 366 WP_022525291.1 DUF1033 family protein -
  I6K87_RS06495 (I6K87_06495) glnA 1324575..1325921 (-) 1347 WP_022525292.1 type I glutamate--ammonia ligase -
  I6K87_RS06500 (I6K87_06500) - 1325960..1326319 (-) 360 WP_003028467.1 MerR family transcriptional regulator -
  I6K87_RS06505 (I6K87_06505) - 1326396..1326926 (-) 531 WP_003028466.1 FUSC family protein -
  I6K87_RS09975 (I6K87_06510) - 1327077..1327759 (-) 683 Protein_1277 COG3942 and LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 39098.16 Da        Isoelectric Point: 9.8316

>NTDB_id=537267 I6K87_RS06480 WP_180363191.1 1322050..1323072(-) (comYB) [Streptococcus anginosus strain FDAARGOS_1357]
MQQDISILNKQKRKKLSTVKQKKVVELLNNLFSSGFHLAEIIDFLKRSALLEEVYVDRMKEGLSTGKPFSDIMASLGFSD
NVVTQLSLAELHGNLSLSLSKIEEYLENVSKIKKKLVEVATYPFILFVFLIFIMLGLRNYLLPQLDRQNVATQIISNLPQ
LFLGSLGVVFVLLAIGFYWFQKNSKITTFGLLARLPFFGAFIQTYLTAYYAREWGNMIGQGLELSQIFQMMQGQRSAIFQ
EIGKDLEVALQNGQEFSKRVKTYPFFKKELGLMIEYGEVKSRLGRELEVYAQKTWETFFKRVHQAMNVIQPLVFVFVALM
IVLLYAAMLLPIYQNMEVQL

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=537267 I6K87_RS06480 WP_180363191.1 1322050..1323072(-) (comYB) [Streptococcus anginosus strain FDAARGOS_1357]
ATGCAGCAGGACATATCAATCTTGAACAAGCAGAAGCGGAAAAAATTATCCACAGTTAAGCAGAAAAAGGTCGTAGAGTT
ACTGAATAATCTTTTTTCTAGTGGCTTTCATTTGGCAGAAATTATCGACTTTTTGAAGCGAAGTGCCTTGTTAGAAGAAG
TCTATGTGGACAGGATGAAAGAGGGGTTGTCAACAGGAAAGCCTTTTTCGGACATCATGGCAAGCTTAGGTTTTTCAGAT
AATGTAGTAACACAACTTTCGCTGGCAGAATTACACGGAAATCTCTCACTCAGCCTGAGTAAGATTGAGGAATACTTGGA
AAATGTCTCAAAAATTAAGAAAAAGTTGGTTGAAGTGGCGACTTATCCCTTTATTTTGTTTGTCTTTTTGATATTCATTA
TGCTGGGGTTACGTAATTATTTACTCCCGCAACTCGATCGTCAAAATGTAGCAACGCAGATTATCAGTAATTTGCCGCAA
CTTTTTCTGGGTTCATTAGGAGTAGTCTTTGTTTTGTTAGCGATAGGTTTTTATTGGTTCCAAAAAAACTCAAAAATAAC
AACATTTGGCTTGTTAGCTCGCCTTCCCTTTTTTGGCGCTTTTATTCAAACGTATTTGACAGCTTATTATGCGAGAGAAT
GGGGAAATATGATTGGTCAAGGTTTAGAACTTAGTCAGATTTTTCAGATGATGCAAGGACAACGCTCTGCTATATTTCAA
GAAATTGGGAAAGATTTAGAAGTTGCACTGCAAAATGGTCAGGAATTTTCGAAAAGGGTTAAAACATACCCATTTTTTAA
AAAGGAATTGGGCTTGATGATCGAATACGGCGAAGTGAAGTCTAGATTGGGGCGTGAATTAGAAGTTTATGCTCAAAAAA
CATGGGAGACATTTTTTAAACGTGTTCACCAAGCGATGAATGTCATCCAACCACTAGTGTTTGTCTTTGTGGCTTTAATG
ATTGTATTGTTGTATGCAGCCATGTTGCTGCCAATTTATCAAAATATGGAGGTTCAATTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(26-143)

Type II secretion system (T2SS), protein F (T2SSF)

(211-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

70.294

100

0.703
  comGB/cglB Streptococcus mitis NCTC 12261

67.463

98.529

0.665
  comGB/cglB Streptococcus mitis SK321

66.866

98.529

0.659
  comGB/cglB Streptococcus pneumoniae TIGR4

66.567

98.529

0.656
  comGB/cglB Streptococcus pneumoniae R6

66.567

98.529

0.656
  comGB/cglB Streptococcus pneumoniae Rx1

66.567

98.529

0.656
  comGB/cglB Streptococcus pneumoniae D39

66.567

98.529

0.656
  comYB Streptococcus mutans UA159

60.526

100

0.609
  comYB Streptococcus mutans UA140

60.234

100

0.606
  comGB Lactococcus lactis subsp. cremoris KW2

51.335

99.118

0.509