Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JQU52_RS03890 Genome accession   NZ_CP069798
Coordinates   770223..771395 (+) Length   390 a.a.
NCBI ID   WP_230339837.1    Uniprot ID   A0A892ZIS8
Organism   Paralysiella testudinis strain 26B     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 765223..776395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQU52_RS03870 (JQU52_03905) murU 766086..766784 (+) 699 WP_230339833.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  JQU52_RS03875 (JQU52_03910) - 766872..767660 (+) 789 WP_230339834.1 crotonase/enoyl-CoA hydratase family protein -
  JQU52_RS03880 (JQU52_03915) - 768058..769326 (+) 1269 WP_230339835.1 NRAMP family divalent metal transporter -
  JQU52_RS03885 (JQU52_03920) ruvC 769497..770030 (+) 534 WP_230339836.1 crossover junction endodeoxyribonuclease RuvC -
  JQU52_RS03890 (JQU52_03925) dprA 770223..771395 (+) 1173 WP_230339837.1 DNA-processing protein DprA Machinery gene
  JQU52_RS03895 (JQU52_03930) - 771407..771865 (+) 459 WP_230339838.1 DUF494 family protein -
  JQU52_RS03900 (JQU52_03935) topA 771994..774291 (+) 2298 WP_230339839.1 type I DNA topoisomerase -
  JQU52_RS03905 (JQU52_03940) rsmD 774376..774936 (+) 561 WP_230339840.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  JQU52_RS03910 (JQU52_03945) - 775125..775376 (+) 252 WP_230339841.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 41034.59 Da        Isoelectric Point: 6.0770

>NTDB_id=536743 JQU52_RS03890 WP_230339837.1 770223..771395(+) (dprA) [Paralysiella testudinis strain 26B]
MDTRERESWIELALTPYIGAESFLRLWQHFGSAAAVLAADPQALKPHLHFQAALKHWRGDAARQAAEAALNWETSHADGR
LLLLADADYPVMLAEGMAPPPLLFVRGDVASLSRPALAIVGSRHATPQALRIARDFGQALSDAGVVVVSGMADGIDTAAH
EGALRGRGATVAVWGTGIDRVYPAKNKALAQQITGQGCVVSEFPLDTRPVAGNFPRRNRIIAALSQATLVVEAAPESGSL
ITARLAAEMGREVLAVPGSIDNPHSKGCHALIKQGAKLTENLDDIWQECPGLMAASLQHSFGRSPLQNAPLQPSGLPESL
PSAAATQENAGNIASQHGMLAQMGFDPVHPDALAQTLGIAAADVYAELTELELAGSIAALPGGRYQRVQS

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=536743 JQU52_RS03890 WP_230339837.1 770223..771395(+) (dprA) [Paralysiella testudinis strain 26B]
ATGGACACCCGCGAGCGTGAATCTTGGATTGAATTGGCGTTAACCCCGTATATCGGCGCAGAAAGCTTTTTGCGGCTGTG
GCAGCATTTCGGCAGCGCTGCGGCCGTGTTGGCGGCAGACCCGCAAGCGCTAAAGCCGCATTTGCACTTTCAGGCAGCCT
TAAAACATTGGCGCGGTGATGCGGCGCGTCAAGCCGCCGAAGCGGCGTTAAACTGGGAAACGAGCCATGCCGACGGGCGT
TTGCTGTTGCTGGCCGATGCCGATTATCCGGTGATGCTGGCCGAAGGCATGGCACCGCCGCCCTTGTTGTTTGTGCGCGG
CGATGTGGCCAGCCTCAGCCGCCCGGCCTTGGCGATTGTGGGCAGTCGCCACGCCACCCCGCAGGCGCTGCGCATTGCGC
GCGATTTCGGCCAGGCCTTGTCGGATGCGGGTGTGGTGGTGGTGTCGGGCATGGCCGACGGGATTGACACCGCCGCCCAC
GAAGGCGCGTTGCGCGGGCGCGGTGCTACTGTGGCGGTGTGGGGCACCGGCATCGATCGGGTTTATCCGGCCAAAAATAA
GGCGCTAGCGCAGCAAATCACCGGCCAAGGCTGCGTGGTGTCGGAATTCCCGCTCGACACCCGCCCCGTGGCGGGCAATT
TCCCGCGCCGCAACCGCATTATCGCCGCCCTGAGCCAAGCCACTTTGGTGGTGGAAGCCGCGCCGGAGTCCGGCTCGCTG
ATTACCGCACGGCTGGCGGCGGAAATGGGGCGCGAAGTGCTGGCGGTGCCCGGCTCGATCGATAATCCGCACAGCAAAGG
CTGCCATGCTTTAATCAAACAAGGTGCCAAGCTCACCGAAAATTTGGACGACATTTGGCAGGAATGCCCGGGGCTGATGG
CGGCCTCATTGCAACACAGCTTTGGCCGCAGCCCCTTGCAAAATGCGCCGCTGCAACCATCTGGGCTGCCTGAAAGCTTG
CCAAGTGCGGCTGCCACGCAGGAAAATGCTGGCAATATTGCATCGCAGCATGGTATGTTGGCGCAAATGGGCTTTGACCC
GGTGCATCCCGATGCGCTGGCACAAACGCTTGGCATCGCCGCCGCAGATGTGTATGCTGAACTTACCGAGCTGGAGCTGG
CCGGCAGCATCGCCGCCCTTCCCGGTGGCCGTTACCAACGTGTTCAATCTTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(325-383)

DNA recombination-mediator protein A (DNA_processg_A)

(77-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

59.653

100

0.618
  dprA Neisseria gonorrhoeae MS11

59.158

100

0.613
  dprA Neisseria meningitidis MC58

59.398

100

0.608
  dprA Neisseria meningitidis strain C311

59.398

100

0.608
  dprA Vibrio cholerae strain A1552

39.186

100

0.395
  dprA Glaesserella parasuis strain SC1401

39.737

97.436

0.387
  dprA Vibrio campbellii strain DS40M4

38.947

97.436

0.379
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

36.693

99.231

0.364