Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6K04_RS19475 Genome accession   NZ_CP069442
Coordinates   4139835..4141058 (+) Length   407 a.a.
NCBI ID   WP_081526326.1    Uniprot ID   A0A202BBG0
Organism   Chromobacterium violaceum strain FDAARGOS_1274     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4134835..4146058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K04_RS19455 (I6K04_19455) - 4135093..4135914 (+) 822 WP_011137379.1 cytochrome C assembly family protein -
  I6K04_RS19460 (I6K04_19460) - 4135983..4136300 (+) 318 WP_011137378.1 ComEA family DNA-binding protein -
  I6K04_RS19465 (I6K04_19465) - 4136707..4137834 (+) 1128 WP_081526327.1 porin -
  I6K04_RS19470 (I6K04_19470) pilF 4138003..4139709 (+) 1707 WP_011137375.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6K04_RS19475 (I6K04_19475) pilC 4139835..4141058 (+) 1224 WP_081526326.1 type II secretion system F family protein Machinery gene
  I6K04_RS19480 (I6K04_19480) - 4141058..4141975 (+) 918 WP_081526325.1 prepilin peptidase -
  I6K04_RS19485 (I6K04_19485) coaE 4141960..4142574 (+) 615 WP_081526324.1 dephospho-CoA kinase -
  I6K04_RS19490 (I6K04_19490) zapD 4142611..4143369 (+) 759 WP_011137371.1 cell division protein ZapD -
  I6K04_RS19495 (I6K04_19495) yacG 4143375..4143566 (+) 192 WP_011137370.1 DNA gyrase inhibitor YacG -
  I6K04_RS19500 (I6K04_19500) - 4143639..4144880 (-) 1242 WP_043596725.1 N-acetylmuramoyl-L-alanine amidase -
  I6K04_RS19505 (I6K04_19505) tsaE 4144841..4145326 (-) 486 WP_239161278.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44938.80 Da        Isoelectric Point: 10.0089

>NTDB_id=534744 I6K04_RS19475 WP_081526326.1 4139835..4141058(+) (pilC) [Chromobacterium violaceum strain FDAARGOS_1274]
MATTAAKKANPGYIWEWEGKDKSGKMIRGELRAESEAVAKTQLRRQGINVAKIRRRRSGFGKKITEKDITLFTRQLSTMM
RAGVPLLQAFDIAAKGHSNPAVTRMLLEVRADVETGLSLAEAFRKRPLYFDKLFCNIIAAGEAGGVLDTLLDKLATYKEK
VMAIKSKIKSAMIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDQFVHFWWLIFGTLFGAIFAF
FYAFKRTPKMQEQMDRILLRLPVIGDIIRKATIARWARTLSTLFSAGVPLVEALDSVGGAAGNQVYAEATRRIQADVNTG
SSLNYSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGILIGGLVIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=534744 I6K04_RS19475 WP_081526326.1 4139835..4141058(+) (pilC) [Chromobacterium violaceum strain FDAARGOS_1274]
ATGGCGACCACGGCAGCCAAAAAGGCGAATCCGGGCTACATCTGGGAATGGGAAGGCAAGGACAAGTCCGGCAAGATGAT
ACGGGGCGAGCTGCGCGCCGAGTCGGAGGCCGTCGCCAAGACCCAGTTGCGGCGGCAGGGCATCAATGTCGCCAAGATCC
GTCGGCGGCGCAGCGGTTTCGGCAAGAAGATCACCGAAAAGGACATCACGCTGTTCACCCGCCAATTGTCGACCATGATG
CGCGCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGCGGCCAAGGGCCACAGCAATCCGGCGGTGACCCGGATGCTGCT
GGAGGTGCGGGCGGATGTCGAAACCGGCCTGTCACTGGCCGAGGCCTTCCGCAAGCGCCCGCTGTATTTCGACAAGCTGT
TCTGCAACATCATCGCGGCCGGCGAGGCGGGCGGCGTGCTGGATACCTTGCTGGACAAGCTGGCCACCTATAAGGAAAAG
GTGATGGCCATCAAGTCCAAGATCAAGTCGGCGATGATCTATCCGTCGGCCATCGTCGGCACCGCCTTCATCATCACCGC
GGTGATCATGATTTACGTGATCCCGGCGTTCAAGGACCTGTTCTCCAGCTTCGGCGCCAATCTGCCGGCGCCGACGCTGT
TCGTGATCTGGCTGTCGGACCAGTTCGTCCATTTCTGGTGGCTGATCTTCGGCACGCTGTTCGGCGCGATATTCGCCTTT
TTCTACGCGTTCAAGCGCACGCCCAAGATGCAGGAGCAGATGGACCGCATCCTGCTGCGCTTGCCGGTGATCGGCGACAT
CATACGCAAGGCCACCATCGCGCGCTGGGCGCGCACCTTGTCCACGCTGTTTTCCGCCGGCGTCCCGCTGGTGGAGGCGC
TGGACTCGGTCGGCGGGGCGGCCGGCAATCAGGTTTACGCCGAGGCGACGCGGCGCATCCAGGCCGATGTCAACACCGGT
TCCAGCCTCAATTACTCGATGCAGCGCACCGACCTGTTCCCTAACATGGTGCTGCAGATGACTTCGATAGGCGAAGAGTC
CGGCTCGCTCGACCAGATGCTGGACAAGGTGGCCGACTTTTACGAGGAAGAAGTGGATAATGCGGTAGCCGCGCTGTCCA
GCCTGCTGGAGCCGGCGATCATGGTGATTCTGGGGATATTGATAGGCGGGTTGGTGATCGCGATGTACATGCCGATTTTC
AAGATGGGCCAGGTGGTGGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A202BBG0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.713

99.263

0.533
  pilC Pseudomonas stutzeri DSM 10701

52.97

99.263

0.526
  pilG Neisseria gonorrhoeae MS11

53.453

96.069

0.514
  pilG Neisseria meningitidis 44/76-A

53.453

96.069

0.514
  pilC Acinetobacter baylyi ADP1

50.123

100

0.501
  pilC Acinetobacter baumannii D1279779

49.386

100

0.494
  pilC Vibrio campbellii strain DS40M4

37.74

100

0.386
  pilC Vibrio cholerae strain A1552

36.935

97.789

0.361
  pilC Thermus thermophilus HB27

36.842

98.034

0.361