Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JR311_RS09455 Genome accession   NZ_CP069391
Coordinates   1879329..1880579 (+) Length   416 a.a.
NCBI ID   WP_204530574.1    Uniprot ID   -
Organism   Bacillus velezensis strain Sam8H1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1874329..1885579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR311_RS09425 (JR311_09425) yfmH 1874413..1875699 (+) 1287 WP_095318225.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  JR311_RS09430 (JR311_09430) ymfI 1875758..1876486 (+) 729 WP_204530573.1 elongation factor P 5-aminopentanone reductase -
  JR311_RS09435 (JR311_09435) - 1876562..1876819 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  JR311_RS09440 (JR311_09440) - 1876947..1877738 (+) 792 WP_003154149.1 DUF3388 domain-containing protein -
  JR311_RS09445 (JR311_09445) - 1877757..1878656 (+) 900 WP_156735029.1 helix-turn-helix domain-containing protein -
  JR311_RS09450 (JR311_09450) pgsA 1878730..1879311 (+) 582 WP_003154147.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JR311_RS09455 (JR311_09455) cinA 1879329..1880579 (+) 1251 WP_204530574.1 competence/damage-inducible protein A Machinery gene
  JR311_RS09460 (JR311_09460) recA 1880750..1881793 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  JR311_RS09465 (JR311_09465) - 1881962..1883143 (+) 1182 WP_077722212.1 serine hydrolase domain-containing protein -
  JR311_RS09470 (JR311_09470) rny 1883436..1884995 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45154.50 Da        Isoelectric Point: 5.3789

>NTDB_id=534372 JR311_RS09455 WP_204530574.1 1879329..1880579(+) (cinA) [Bacillus velezensis strain Sam8H1]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKMTISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHTPGRVFIGISAEGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=534372 JR311_RS09455 WP_204530574.1 1879329..1880579(+) (cinA) [Bacillus velezensis strain Sam8H1]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCGGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTACCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGATCTGATTATTTTTTCAGGCGGCCTCGGGCCGACCAAGGACGATTTA
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCGGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGACCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGTTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGTTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAATCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTTACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCCCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATGACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATACGCCGGGCCGCGTCT
TTATCGGCATTTCAGCGGAAGGAAAAGAAGAGGTGCACGAATTTCACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mitis SK321

46.89

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385