Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   U722_RS17085 Genome accession   NC_023073
Coordinates   3554223..3555353 (-) Length   376 a.a.
NCBI ID   WP_003151195.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3549223..3560353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS20265 (U722_18140) - 3549717..3549947 (-) 231 WP_223203781.1 hypothetical protein -
  U722_RS17055 (U722_18145) - 3550067..3550471 (-) 405 WP_003151203.1 Rrf2 family transcriptional regulator -
  U722_RS17060 (U722_18150) ureC 3550612..3552321 (-) 1710 WP_024085908.1 urease subunit alpha -
  U722_RS17065 (U722_18155) ureB 3552318..3552692 (-) 375 WP_003151199.1 urease subunit beta -
  U722_RS17070 (U722_18160) ureA 3552689..3553006 (-) 318 WP_003151198.1 urease subunit gamma -
  U722_RS17075 (U722_18165) - 3553359..3553547 (-) 189 WP_003151197.1 CsbD family protein -
  U722_RS17080 (U722_18170) - 3553621..3554100 (-) 480 WP_003151196.1 hypothetical protein -
  U722_RS17085 (U722_18175) rapC 3554223..3555353 (-) 1131 WP_003151195.1 tetratricopeptide repeat protein Regulator
  U722_RS17090 (U722_18180) moaA 3555544..3556569 (-) 1026 WP_014306000.1 GTP 3',8-cyclase MoaA -
  U722_RS17095 (U722_18185) fdhD 3556587..3557375 (-) 789 WP_014306001.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  U722_RS20090 (U722_18190) - 3557470..3557634 (-) 165 WP_003151191.1 hypothetical protein -
  U722_RS17100 (U722_18195) - 3557721..3558401 (-) 681 WP_015387578.1 VWA domain-containing protein -
  U722_RS17105 (U722_18205) - 3558711..3559397 (-) 687 WP_024085909.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44932.05 Da        Isoelectric Point: 5.3221

>NTDB_id=53427 U722_RS17085 WP_003151195.1 3554223..3555353(-) (rapC) [Bacillus amyloliquefaciens LFB112]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYAEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGIMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=53427 U722_RS17085 WP_003151195.1 3554223..3555353(-) (rapC) [Bacillus amyloliquefaciens LFB112]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTACGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTTTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATTTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATGCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTCACCTATTATGAAAGAGGGATCATGATCGCGAAAGAACGCGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)

Tetratricopeptide repeat (TPR_12)

(192-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423
  rapF Bacillus subtilis subsp. subtilis str. 168

40

99.734

0.399

Multiple sequence alignment