Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JM642_RS18535 Genome accession   NZ_CP069350
Coordinates   4226696..4227967 (+) Length   423 a.a.
NCBI ID   WP_188871158.1    Uniprot ID   -
Organism   Shewanella sp. LZH-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4221696..4232967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM642_RS18520 (JM642_18520) - 4222645..4223076 (+) 432 WP_275403229.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JM642_RS18525 (JM642_18525) - 4223120..4224550 (-) 1431 WP_203432319.1 O-antigen ligase family protein -
  JM642_RS18530 (JM642_18530) pilB 4224867..4226576 (+) 1710 WP_203432320.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JM642_RS18535 (JM642_18535) pilC 4226696..4227967 (+) 1272 WP_188871158.1 type II secretion system F family protein Machinery gene
  JM642_RS18540 (JM642_18540) pilD 4228097..4229023 (+) 927 WP_047534372.1 A24 family peptidase Machinery gene
  JM642_RS18545 (JM642_18545) coaE 4229180..4229797 (+) 618 WP_099457088.1 dephospho-CoA kinase -
  JM642_RS18550 (JM642_18550) zapD 4229790..4230524 (+) 735 WP_203432321.1 cell division protein ZapD -
  JM642_RS18555 (JM642_18555) yacG 4230620..4230829 (+) 210 WP_037413634.1 DNA gyrase inhibitor YacG -
  JM642_RS18560 (JM642_18560) mutT 4230916..4231311 (+) 396 WP_203432322.1 8-oxo-dGTP diphosphatase MutT -
  JM642_RS18565 (JM642_18565) - 4231455..4231991 (+) 537 WP_203432323.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46047.38 Da        Isoelectric Point: 10.2770

>NTDB_id=534117 JM642_RS18535 WP_188871158.1 4226696..4227967(+) (pilC) [Shewanella sp. LZH-2]
MATATTVKKPRPKKIEQKSQPKIYTFEWKGVNRDGQKTSGELRGASAAEVRSKLKSQGVNPKTVRKQSAALFKLGDAKIT
PMDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLATILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSG
SLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLGAIVAGVFLFVRAHRNSQIVRDRVDEVILKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=534117 JM642_RS18535 WP_188871158.1 4226696..4227967(+) (pilC) [Shewanella sp. LZH-2]
ATGGCTACGGCAACCACAGTAAAAAAGCCTCGCCCAAAAAAGATTGAGCAAAAAAGCCAACCTAAAATTTATACCTTTGA
ATGGAAAGGTGTTAACCGCGACGGCCAAAAAACCAGTGGCGAACTGAGGGGGGCCTCTGCTGCTGAGGTTCGTAGCAAGT
TAAAATCTCAAGGGGTAAATCCTAAAACCGTTCGCAAACAATCGGCCGCCTTATTTAAATTAGGCGATGCCAAAATTACC
CCTATGGATATTGCTATGGTGACTCGGCAAATTGCCACCATGCTTGCCGCTGGGGTGCCATTAGTGACTACCATTGAATT
ACTGGGTCGCGGCCATGAAAAAGCAAAAATGCGTGAACTGTTAGCGACAATTCTATCGGAGATCCAATCAGGTATTCCGT
TATCTGATGCTTTGCGTCCCCACCGACGCTATTTTGATGATCTCTATGTTGACTTAGTTGCTGCGGGTGAACATTCAGGC
TCACTCGATGTAGTGTTTGATCGTATTGCGACCTACCGTGAAAAATCTGAAGCATTAAAATCTAAGATTAAAAAAGCCAT
GTTTTATCCGGCAGCAGTAGTAATAGTCGCTATTTTAGTAACAGCACTATTATTACTGTTTGTGGTGCCACAATTTGAAG
ATATTTTTAAGGGCTTTGGCGCCGAGTTACCTGCATTTACCCAATTGGTTTTGCATATCTCCCGCGGCCTACAATCCTCT
TGGTATATCTTTTTGGGTGCCATAGTGGCTGGCGTATTTTTATTTGTGAGGGCTCATAGGAACTCGCAAATCGTGAGAGA
CAGAGTTGACGAAGTCATCTTAAAAATTCCAGCTATTGGTCCCATTCTACACAAAGGCGCTATGGCGCGTTTTGCCCGTA
CCTTAGCCACCACCTTTGCCGCTGGTGTCCCCTTAATCGACGGCTTAGAATCAGCCGCAGGGGCATCGGGCAATGCGGTA
TACCGTAAAGCCATTTTAAAAATCCGCCAAGAAGTGATGGCGGGGATGCAAATGAACGTGGCAATGCGAACCACAGGGCT
GTTCCCCGATATGCTGATCCAAATGGTGATGATTGGCGAAGAATCAGGCTCACTTGATAATATGCTTAATAAAGTTTCAA
CTATCTATGAGATGCAAGTCGATGATGCTGTTGATGGTTTATCCAGCCTAATTGAACCTATCATGATGGTGGTCATTGGC
ACTGTTGTTGGTGGTCTTATTGTCGCTATGTATTTACCCATCTTCCAAATGGGTAAAGTGGTTGGCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

93.617

0.52
  pilC Legionella pneumophila strain ERS1305867

50.248

95.508

0.48
  pilC Acinetobacter baumannii D1279779

50.503

94.09

0.475
  pilC Acinetobacter baylyi ADP1

50.378

93.853

0.473
  pilC Vibrio cholerae strain A1552

48.622

94.326

0.459
  pilC Vibrio campbellii strain DS40M4

44.988

96.69

0.435
  pilG Neisseria meningitidis 44/76-A

41.791

95.035

0.397
  pilG Neisseria gonorrhoeae MS11

41.791

95.035

0.397