Detailed information NTG0534118

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JM642_RS18540
• Genome accession: NZ_CP069350
• Coordinates: 4228097..4229023 (+)
• Length: 308 a.a.
• NCBI ID: WP_047534372.1
• Uniprot ID: -
• Organism: Shewanella sp. LZH-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4223097..4234023

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JM642_RS18525 (JM642_18525)	-	4223120..4224550 (-)	1431	WP_203432319.1	O-antigen ligase family protein	-
JM642_RS18530 (JM642_18530)	pilB	4224867..4226576 (+)	1710	WP_203432320.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JM642_RS18535 (JM642_18535)	pilC	4226696..4227967 (+)	1272	WP_188871158.1	type II secretion system F family protein	Machinery gene
JM642_RS18540 (JM642_18540)	pilD	4228097..4229023 (+)	927	WP_047534372.1	A24 family peptidase	Machinery gene
JM642_RS18545 (JM642_18545)	coaE	4229180..4229797 (+)	618	WP_099457088.1	dephospho-CoA kinase	-
JM642_RS18550 (JM642_18550)	zapD	4229790..4230524 (+)	735	WP_203432321.1	cell division protein ZapD	-
JM642_RS18555 (JM642_18555)	yacG	4230620..4230829 (+)	210	WP_037413634.1	DNA gyrase inhibitor YacG	-
JM642_RS18560 (JM642_18560)	mutT	4230916..4231311 (+)	396	WP_203432322.1	8-oxo-dGTP diphosphatase MutT	-
JM642_RS18565 (JM642_18565)	-	4231455..4231991 (+)	537	WP_203432323.1	thioredoxin family protein	-
JM642_RS18570 (JM642_18570)	-	4232066..4232992 (-)	927	WP_037413637.1	exopolyphosphatase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34535.01 Da
• Isoelectric Point: 7.0710

>NTDB_id=534118 JM642_RS18540 WP_047534372.1 4228097..4229023(+) (pilD) [Shewanella sp. LZH-2]
MTEFFTLLGHTFDQAPWLFICLSFVFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHADVVKQVGLEKLNKPIDNY
PEKYNLVVPGSACPKCKTAIQPWHNLPVLGWLMLRGKCAACHAPISSRYPIIELITGLLVATLAWHFGPSWQFVFAAILT
FVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTNPTDAIIGAAVGYLSLWSIFWLFKLLTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGALVGITLIVTKRNQLANPIPFGPYIAAAGWIALIWGQPIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=534118 JM642_RS18540 WP_047534372.1 4228097..4229023(+) (pilD) [Shewanella sp. LZH-2]
ATGACTGAATTTTTCACTTTATTGGGTCACACTTTTGACCAAGCTCCATGGCTTTTTATCTGCTTAAGTTTTGTGTTTGC
CGCAACTATTGGCAGTTTTTTAAATGTGGTTATCCATCGTTTTCCGGTGATGATGAAGCGCGAATGGCAACAGGAATGTA
ATCAGTATCTGCAGGAATATCATGCAGATGTAGTCAAACAAGTCGGTTTAGAAAAGCTTAACAAGCCTATAGATAACTAT
CCTGAAAAATACAATCTAGTGGTACCAGGTTCTGCCTGCCCTAAATGCAAAACCGCCATCCAGCCTTGGCATAATTTACC
CGTTTTAGGTTGGTTAATGTTGAGGGGAAAATGCGCTGCCTGTCATGCCCCCATTTCCTCACGCTATCCGATTATTGAGC
TAATAACAGGGTTACTCGTTGCAACACTCGCCTGGCATTTTGGGCCAAGCTGGCAATTTGTGTTTGCTGCAATACTCACT
TTTGTGTTGATTGCGCTCACCGGAATCGATCTGGATGAAATGCTGCTTCCAGATCAAATGACCCTTCCCCTGCTATGGTT
AGGACTACTGATTAACCTCAACCATACCTTTACCAACCCAACCGATGCGATTATTGGTGCCGCTGTAGGCTATTTAAGTT
TATGGTCGATTTTTTGGCTATTTAAGCTGTTAACCGGTAAAGAAGGTATGGGCTATGGTGACTTTAAACTGCTTGCCGTA
TTTGGCGCTTGGCTTGGTTGGCAAATGTTGCCACTGGTGATTTTACTTTCATCCTTAGTGGGTGCCCTCGTTGGCATCAC
GCTGATCGTGACCAAACGTAATCAACTGGCAAATCCGATTCCCTTTGGTCCTTACATTGCCGCCGCAGGCTGGATCGCCC
TAATATGGGGTCAACCTATAGTGGATTGGTATTTAAGTACGTTATAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

• Type IV leader peptidase family (Peptidase_A24) (158-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.361	95.455	0.49
pilD	Vibrio campbellii strain DS40M4	50	97.403	0.487
pilD	Acinetobacter baumannii D1279779	49.827	93.831	0.468
pilD	Acinetobacter nosocomialis M2	49.827	93.831	0.468
pilD	Neisseria gonorrhoeae MS11	45.329	93.831	0.425