Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JOS67_RS14865 Genome accession   NZ_CP069195
Coordinates   3126916..3128025 (-) Length   369 a.a.
NCBI ID   WP_203346781.1    Uniprot ID   -
Organism   Vibrio diabolicus strain SLV18     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3121916..3133025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOS67_RS14835 (JOS67_14835) hemF 3122378..3123295 (-) 918 WP_065645011.1 oxygen-dependent coproporphyrinogen oxidase -
  JOS67_RS14840 (JOS67_14840) - 3123343..3123900 (-) 558 WP_046874602.1 L-threonylcarbamoyladenylate synthase -
  JOS67_RS14845 (JOS67_14845) purE 3124099..3124584 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  JOS67_RS14850 (JOS67_14850) - 3124589..3125716 (+) 1128 WP_104971081.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  JOS67_RS14855 (JOS67_14855) - 3125786..3126355 (-) 570 WP_203346779.1 type I DNA topoisomerase -
  JOS67_RS14860 (JOS67_14860) - 3126434..3126913 (-) 480 WP_203346780.1 DUF494 family protein -
  JOS67_RS14865 (JOS67_14865) dprA 3126916..3128025 (-) 1110 WP_203346781.1 DNA-processing protein DprA Machinery gene
  JOS67_RS14870 (JOS67_14870) - 3128009..3129103 (-) 1095 WP_203346782.1 LysM peptidoglycan-binding domain-containing protein -
  JOS67_RS14875 (JOS67_14875) def 3129242..3129760 (+) 519 WP_005379068.1 peptide deformylase -
  JOS67_RS14880 (JOS67_14880) fmt 3129794..3130741 (+) 948 WP_138939210.1 methionyl-tRNA formyltransferase -
  JOS67_RS14885 (JOS67_14885) rsmB 3130822..3132105 (+) 1284 WP_025628789.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40175.84 Da        Isoelectric Point: 6.5736

>NTDB_id=532843 JOS67_RS14865 WP_203346781.1 3126916..3128025(-) (dprA) [Vibrio diabolicus strain SLV18]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWFEASTNHH
ILTLTDPLYPPQLKQIVAPPPLLFVEGSPTFLSQPQIAMVGSRNASIDGLQHARHFAAEFVQHDFIVTSGLALGIDGHVH
DGALQAKGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAERSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=532843 JOS67_RS14865 WP_203346781.1 3126916..3128025(-) (dprA) [Vibrio diabolicus strain SLV18]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGGGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCGCGTAACATCGTAAACTTCTCTCCCGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTTGATGCCTGTTTAAGTTGGTTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCTTTATCCACCTCAACTCAAACAAATCGTTGCGCCGCCTCCGTTGTTATTTGTTGAGGG
GAGTCCCACCTTTTTATCGCAACCACAAATTGCCATGGTGGGTAGCCGAAATGCGAGTATTGATGGCTTACAGCATGCAC
GCCACTTTGCCGCAGAATTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGCCATGTGCAC
GATGGTGCGTTGCAAGCAAAAGGTAAGACGATTGCGGTGCTGGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGCCCCAACGCCAAGCCGCGCCCGGAAAACT
TCCCGCGTCGAAACCGCATTATTAGCGGATTATCGCTAGGTGTGTTAGTTGTGGAAGCGGCGGAAAGGAGTGGCTCGTTA
ATTACTGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTGTTTGCGCTGCCAGCTTCGATAAATGCCCCTAATGCCAGCGG
TGGCAACCAGTTGATACGTCATGGTGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCTTTGCTTG
ATTGGTCTATTAATCAGAGCACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.198

100

0.832
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

43.767

97.832

0.428
  dprA Haemophilus influenzae Rd KW20

45.245

94.038

0.425
  dprA Neisseria meningitidis strain C311

36.456

100

0.39
  dprA Neisseria meningitidis MC58

36.456

100

0.39
  dprA Neisseria gonorrhoeae MS11

35.115

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

34.86

100

0.371