Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JOA01_RS00405 Genome accession   NZ_CP069079
Coordinates   71548..72729 (+) Length   393 a.a.
NCBI ID   WP_217374496.1    Uniprot ID   -
Organism   Streptococcus parasuis strain BS26     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 66548..77729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOA01_RS00390 (JOA01_00390) mutL 67641..69578 (+) 1938 WP_217375125.1 DNA mismatch repair endonuclease MutL -
  JOA01_RS00395 (JOA01_00395) ruvA 69827..70417 (+) 591 WP_217374494.1 Holliday junction branch migration protein RuvA -
  JOA01_RS00400 (JOA01_00400) - 70942..71511 (+) 570 WP_217374495.1 DNA-3-methyladenine glycosylase I -
  JOA01_RS00405 (JOA01_00405) cinA 71548..72729 (+) 1182 WP_217374496.1 competence/damage-inducible protein A Machinery gene
  JOA01_RS00410 (JOA01_00410) recA 72781..73935 (+) 1155 WP_172036461.1 recombinase RecA Machinery gene
  JOA01_RS00415 (JOA01_00415) spx 74149..74547 (+) 399 WP_217374497.1 transcriptional regulator Spx -
  JOA01_RS00420 (JOA01_00420) - 74657..74923 (+) 267 WP_130554425.1 IreB family regulatory phosphoprotein -
  JOA01_RS00425 (JOA01_00425) ruvX 74923..75342 (+) 420 WP_130554426.1 Holliday junction resolvase RuvX -
  JOA01_RS00430 (JOA01_00430) - 75354..75674 (+) 321 WP_024392832.1 DUF1292 domain-containing protein -
  JOA01_RS00435 (JOA01_00435) - 76192..76332 (+) 141 Protein_68 ISL3 family transposase -
  JOA01_RS00440 (JOA01_00440) - 76362..76911 (+) 550 Protein_69 nucleotidyltransferase family protein -
  JOA01_RS00445 (JOA01_00445) comX/sigX 77094..77564 (+) 471 WP_130554428.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42726.70 Da        Isoelectric Point: 4.4569

>NTDB_id=532150 JOA01_RS00405 WP_217374496.1 71548..72729(+) (cinA) [Streptococcus parasuis strain BS26]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNEQRLLSVLEIASKRSDLVILCGGLGPTEDDLTKQT
LATFLQKELVVDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPFLTQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTIAPYAKVGEVTLRLSTKADSQEEANVRLNQLEEE
ILQRDHLRVFFYAYGDDNSLVKTVATLLEEKKQSLGILENGTGGLLQAELSLALAGQPYYSGGKIIGQLGTESGGLSEEA
SRIREELQADLGLVVSVAVKPESTVDNVLAKVYLALASTSGISKKEVDLGGYSWQYLRQLACLQALDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=532150 JOA01_RS00405 WP_217374496.1 71548..72729(+) (cinA) [Streptococcus parasuis strain BS26]
ATGAAAGCAGAATTAATTGCTGTTGGAACAGAAATATTGACAGGTCAAATTGTGAATACGAATGCTCAATTCTTGTCAGA
AAAATGTGCAGAGCTAGGTATCGATGTATACTTCCACACTGCTGTAGGTGATAATGAACAGCGACTATTGTCTGTACTTG
AAATTGCAAGTAAACGAAGTGATCTGGTCATTTTATGTGGTGGTTTAGGTCCTACTGAAGACGACTTGACCAAGCAAACT
TTAGCGACATTTTTGCAAAAAGAGTTGGTTGTTGACGAACTAGCGATGGCAAAATTAGACCGTTTTTTTGCCAGTCGACC
AGGTCGTGTTCGCACACCTAATAATGAGCGTCAAGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAACCCAGCTGGTT
TAGCTGTAGGTGGTATGATTGAGCAAGATGGTGTGACCTATATTGTTTTGCCTGGCCCACCAAGTGAACTCAAGGCCATG
TTTTCTGAGAGTCTGTTACCTTTTTTGACTCAATCTCAGCAACAACTTTACTCGCGTGTCCTACGCTTTTTTGGAATAGG
TGAAAGCCAGTTGGTGACTGTTTTAGCGGATTTGATTGACAAGCAGACAGACCCGACTATTGCGCCTTATGCAAAAGTTG
GAGAGGTGACGCTTCGTTTATCTACAAAGGCAGATAGCCAGGAAGAAGCGAACGTTCGTTTGAATCAGTTGGAAGAAGAG
ATATTGCAACGTGACCATTTGAGAGTTTTTTTCTATGCATATGGGGATGACAATAGTTTGGTTAAAACCGTAGCGACTCT
TTTAGAGGAAAAGAAACAATCTTTGGGCATCCTAGAGAATGGAACAGGTGGTTTATTACAAGCAGAATTGAGTCTGGCTT
TGGCTGGTCAGCCGTATTATAGTGGAGGAAAAATCATCGGTCAGCTAGGGACAGAATCGGGCGGGCTATCAGAAGAAGCA
AGTCGCATTCGGGAGGAACTACAAGCTGATTTAGGGCTAGTTGTGTCGGTGGCAGTCAAACCAGAATCAACAGTAGACAA
CGTACTTGCTAAAGTATATCTAGCCTTGGCCAGTACCTCGGGTATTTCTAAAAAAGAGGTAGATTTAGGAGGTTATTCAT
GGCAATACCTTCGTCAACTTGCTTGTTTACAGGCGTTAGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

87.023

100

0.87
  cinA Streptococcus mitis SK321

55.288

100

0.585
  cinA Streptococcus mitis NCTC 12261

55.048

100

0.583
  cinA Streptococcus pneumoniae TIGR4

54.808

100

0.58
  cinA Streptococcus pneumoniae Rx1

54.808

100

0.58
  cinA Streptococcus pneumoniae R6

54.808

100

0.58
  cinA Streptococcus mutans UA159

55.474

100

0.58
  cinA Streptococcus pneumoniae D39

54.567

100

0.578
  cinA Bacillus subtilis subsp. subtilis str. 168

47.869

77.608

0.372