Detailed information NTG0532070

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: JNE45_RS16425
• Genome accession: NZ_CP069061
• Coordinates: 3223629..3224315 (-)
• Length: 228 a.a.
• NCBI ID: WP_186437285.1
• Uniprot ID: -
• Organism: Bacillus safensis strain F6
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3218629..3229315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JNE45_RS16390 (JNE45_16390)	fliW	3218767..3219201 (-)	435	WP_075611996.1	flagellar assembly protein FliW	-
JNE45_RS16395 (JNE45_16395)	-	3219230..3219808 (-)	579	WP_095409672.1	DUF6470 family protein	-
JNE45_RS16400 (JNE45_16400)	flgL	3219855..3220763 (-)	909	WP_203128904.1	flagellar hook-associated protein FlgL	-
JNE45_RS16405 (JNE45_16405)	flgK	3220773..3222293 (-)	1521	WP_203128905.1	flagellar hook-associated protein FlgK	-
JNE45_RS16410 (JNE45_16410)	-	3222309..3222791 (-)	483	WP_144472023.1	flagellar protein FlgN	-
JNE45_RS16415 (JNE45_16415)	flgM	3222810..3223073 (-)	264	WP_095409676.1	flagellar biosynthesis anti-sigma factor FlgM	-
JNE45_RS16420 (JNE45_16420)	-	3223153..3223572 (-)	420	WP_039181808.1	TIGR03826 family flagellar region protein	-
JNE45_RS16425 (JNE45_16425)	comFC	3223629..3224315 (-)	687	WP_186437285.1	ComF family protein	Machinery gene
JNE45_RS16430 (JNE45_16430)	-	3224312..3224605 (-)	294	WP_041088040.1	late competence development ComFB family protein	-
JNE45_RS16435 (JNE45_16435)	comFA	3224655..3226052 (-)	1398	WP_274382373.1	DEAD/DEAH box helicase	Machinery gene
JNE45_RS16440 (JNE45_16440)	-	3226173..3227015 (-)	843	WP_203128907.1	DegV family protein	-
JNE45_RS16445 (JNE45_16445)	degU	3227231..3227920 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
JNE45_RS16450 (JNE45_16450)	degS	3227985..3229160 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26161.69 Da
• Isoelectric Point: 9.9366

>NTDB_id=532070 JNE45_RS16425 WP_186437285.1 3223629..3224315(-) (comFC) [Bacillus safensis strain F6]
MICPICDGHFVHAFTWKSLLLLNDERLCVACKNQLVKIERPICPTCGRAQSNDQMCQDCDRWNERIDSTKVLIKNRSVYI
YNELMKDVFARFKFRGDTALVELFKRDVQAAFKRSFCIKDPLLIPIPLSNERLKERGFNQSVIIASLIGKPILQPLVKIH
QSKQSKKKKNERLDQKGLFQIKQTNVIVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=532070 JNE45_RS16425 WP_186437285.1 3223629..3224315(-) (comFC) [Bacillus safensis strain F6]
TTGATTTGCCCGATTTGCGATGGACATTTTGTGCATGCTTTTACATGGAAATCATTACTTCTATTAAATGATGAGCGTCT
TTGTGTAGCATGTAAGAATCAATTAGTAAAGATTGAGCGTCCTATTTGTCCAACCTGCGGAAGAGCGCAGTCAAATGATC
AAATGTGCCAAGACTGTGATAGATGGAATGAACGCATTGATTCTACTAAAGTCCTTATAAAAAATAGGTCAGTTTATATC
TACAACGAGTTGATGAAAGATGTCTTTGCCCGCTTTAAATTTCGGGGTGATACGGCTTTAGTTGAGCTGTTTAAACGAGA
TGTACAAGCAGCATTTAAACGTTCCTTCTGCATAAAAGATCCATTGCTGATCCCGATCCCTTTAAGTAATGAAAGACTAA
AAGAAAGAGGGTTTAATCAGTCCGTTATCATCGCTTCCTTGATAGGTAAGCCGATATTGCAGCCACTCGTGAAAATACAT
CAAAGTAAGCAGTCCAAAAAAAAGAAAAATGAACGCCTAGATCAAAAAGGTTTGTTTCAAATAAAGCAAACAAATGTGAT
TGTTCAAAGAGATATTATATTAGTTGATGATATCTATACAACGGGAGCAACCATTTATGATGCGGCAAGAATTTTGAAAG
ACGCAGGTGCCAAAAGTGTTTCTTCTTTTACGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (142-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	48.261	100	0.487
comFC/cflB	Streptococcus mitis NCTC 12261	36.681	100	0.368
comFC/cflB	Streptococcus mitis SK321	36.681	100	0.368
comFC/cflB	Streptococcus pneumoniae TIGR4	36.245	100	0.364
comFC/cflB	Streptococcus pneumoniae Rx1	36.245	100	0.364
comFC/cflB	Streptococcus pneumoniae D39	36.245	100	0.364
comFC/cflB	Streptococcus pneumoniae R6	36.245	100	0.364