Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   LAJ61_RS00830 Genome accession   NZ_CP083409
Coordinates   194199..196316 (-) Length   705 a.a.
NCBI ID   WP_224054110.1    Uniprot ID   -
Organism   Moraxella osloensis strain FLMOS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 189199..201316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ61_RS00815 (LAJ61_00810) - 189436..190698 (-) 1263 WP_224054108.1 YbfB/YjiJ family MFS transporter -
  LAJ61_RS00820 (LAJ61_00815) pepN 190754..193453 (-) 2700 WP_409034972.1 aminopeptidase N -
  LAJ61_RS00825 (LAJ61_00820) - 193634..194104 (+) 471 WP_224054109.1 MgtC/SapB family protein -
  LAJ61_RS00830 (LAJ61_00825) uvrB 194199..196316 (-) 2118 WP_224054110.1 excinuclease ABC subunit UvrB Machinery gene
  LAJ61_RS00835 (LAJ61_00830) metK 196758..197924 (+) 1167 WP_007115720.1 methionine adenosyltransferase -
  LAJ61_RS00840 (LAJ61_00835) - 198013..198327 (+) 315 WP_007115719.1 DUF3144 domain-containing protein -
  LAJ61_RS00845 (LAJ61_00840) - 198412..198981 (+) 570 WP_224054111.1 hypothetical protein -
  LAJ61_RS00850 (LAJ61_00845) - 199123..199479 (-) 357 WP_224054112.1 hypothetical protein -
  LAJ61_RS00855 (LAJ61_00850) prpB 199853..200746 (+) 894 WP_050325521.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 705 a.a.        Molecular weight: 80098.26 Da        Isoelectric Point: 5.5864

>NTDB_id=532072 LAJ61_RS00830 WP_224054110.1 194199..196316(-) (uvrB) [Moraxella osloensis strain FLMOS1]
MRPPQSSRSERELSQLARQIQDDAQITGVNASGTQISSKPFEMVTEFEPSGDQPQAIAKLVDGIEHGMHGQLLLGVTGSG
KTYTMAKVIAQCQRPTIIMAHNKTLAAQLYGEFKAFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRL
SATRALLERRDAIIIASVSCIYGLGDPESYLKMLLHIVVGDKIDRTAMLKRLVELQYTRNELDFGRGTYRLRGEVLDIYP
AESEQLAVRISMFDDEVEKITWFDPLTGKNVRSVPRITIYPKSHYVTPRDKLEKASGTIKAELEQRLEYFRAHDKLIEAQ
RIKERTTYDLEMIQQLGYCNGIENYSRHLSGRPAGEAPPTLFDYIPPDALLFIDESHVTVPQVGAMYKGDRSRKETLVNY
GFRLPSAMDNRPLMFEEWERITPATIFVSATPAQYELEHSEQVVEQVVRPTGLVDPQLEIRPVLTQVDDVLSEINIRKAK
DERVLITTLTKRMAEDLTSYLKEYNIKVAYLHSDIDTVERMKIIHELRTGVHDVLVGINLLREGLDMPEVSLVAIFDADK
EGFLRSERSLIQTIGRAARHVNGKAILYADSITPSMQKAIEETERRRAKQMAYNEEHGITPTSARRQITDKIDTGEAEAP
NDNQAIAVTHAFPDVDISILRSPDLLAKEIARLEKEMKSLSRDLKFEEAARVRDKVVSLREFVLQ

Nucleotide


Download         Length: 2118 bp        

>NTDB_id=532072 LAJ61_RS00830 WP_224054110.1 194199..196316(-) (uvrB) [Moraxella osloensis strain FLMOS1]
ATGCGACCACCTCAATCTTCCCGCTCCGAACGTGAACTTAGCCAACTTGCCCGCCAAATCCAAGATGATGCCCAAATCAC
GGGTGTCAATGCCAGTGGCACCCAAATCTCGAGTAAACCCTTTGAGATGGTGACCGAATTTGAACCCTCAGGCGACCAAC
CGCAAGCGATTGCCAAATTGGTTGACGGCATTGAGCACGGCATGCACGGTCAGCTGCTCTTAGGGGTGACAGGTTCAGGT
AAAACCTACACCATGGCAAAAGTGATTGCCCAATGCCAGCGTCCCACCATTATCATGGCACACAACAAAACCCTTGCTGC
CCAGCTATATGGCGAGTTTAAGGCGTTCTTTCCGCACAATGCTGTGGAGTATTTTGTCAGTTATTACGACTATTATCAGC
CTGAAGCGTATGTGCCTGCCAGCGATACCTTTATCGAGAAAGACAGCGCCATTAACGACCATATCGACCAAATGCGACTG
TCCGCCACGCGTGCGCTACTCGAACGTCGTGACGCCATTATCATTGCATCGGTGTCTTGTATCTATGGTTTGGGTGACCC
AGAAAGCTACCTAAAAATGCTTCTTCACATCGTAGTGGGTGACAAAATCGACCGCACTGCCATGCTCAAACGCTTGGTGG
AGCTGCAATATACGCGTAACGAGCTTGACTTTGGGCGAGGTACTTACCGCTTGCGTGGCGAAGTGCTTGATATATACCCC
GCTGAGTCTGAACAGCTTGCGGTGCGTATCAGTATGTTTGATGATGAAGTGGAAAAAATCACTTGGTTTGACCCGTTGAC
AGGTAAGAACGTGCGCAGTGTGCCACGCATTACCATCTATCCAAAATCACACTACGTCACCCCACGAGACAAGCTAGAAA
AAGCCAGTGGCACTATCAAAGCCGAGCTTGAACAACGCCTTGAGTATTTTCGAGCGCATGACAAACTGATTGAAGCCCAG
CGTATCAAAGAACGCACCACTTATGATTTGGAAATGATTCAGCAGCTTGGCTACTGTAACGGCATTGAGAACTATTCGCG
CCATTTATCGGGACGTCCTGCGGGTGAAGCGCCGCCGACGTTGTTTGACTATATTCCGCCCGACGCCTTGCTATTTATTG
ACGAAAGTCATGTAACCGTGCCACAAGTCGGCGCGATGTACAAAGGCGATAGAAGTCGTAAAGAAACCTTGGTCAATTAT
GGCTTTCGCCTGCCATCTGCGATGGATAACCGCCCGCTGATGTTTGAAGAATGGGAGCGTATTACCCCTGCGACCATTTT
TGTGTCGGCGACCCCTGCCCAATACGAGCTTGAGCATAGCGAGCAGGTCGTTGAGCAAGTGGTACGTCCGACCGGTCTAG
TTGATCCACAGCTTGAGATTCGTCCTGTCTTGACCCAAGTTGATGATGTGCTATCAGAAATCAACATTCGTAAAGCCAAA
GATGAGCGAGTGCTGATTACCACGCTCACCAAGCGCATGGCAGAAGATTTGACCAGTTATCTAAAAGAATACAATATCAA
AGTCGCTTATCTGCACTCGGATATCGACACGGTGGAGCGGATGAAAATCATCCATGAACTGCGCACAGGCGTGCATGATG
TGCTAGTCGGTATCAACCTGTTGCGTGAGGGTTTGGATATGCCTGAGGTGAGTCTGGTGGCGATTTTTGATGCGGATAAA
GAAGGCTTTTTACGCTCGGAGCGTTCGCTCATTCAGACCATCGGTCGTGCCGCGCGCCATGTTAATGGTAAGGCGATTTT
GTACGCTGACAGCATTACCCCAAGTATGCAAAAGGCGATTGAAGAAACCGAGCGTCGCCGTGCCAAACAGATGGCGTATA
ACGAAGAACATGGTATCACGCCGACATCCGCTCGCCGTCAGATTACCGATAAAATCGACACCGGCGAGGCAGAAGCCCCG
AATGATAACCAAGCGATTGCGGTCACTCATGCATTCCCCGATGTGGATATTTCGATTTTGCGTTCGCCTGACTTGCTTGC
CAAAGAGATTGCACGGCTAGAAAAAGAGATGAAATCCTTGTCGCGTGATTTGAAGTTTGAGGAAGCGGCAAGAGTGCGCG
ATAAAGTAGTAAGTTTACGGGAATTTGTGTTGCAATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(473-579)

Type III restriction enzyme, res subunit (ResIII)

(47-123)

UvrB/uvrC motif (UVR)

(668-701)

Ultra-violet resistance protein B (UvrB)

(587-628)

UvrB interaction domain (UvrB_inter)

(195-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.138

94.752

0.532
  uvrB Streptococcus pneumoniae R6

56.138

94.752

0.532
  uvrB Streptococcus pneumoniae D39

56.138

94.752

0.532