Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JNE45_RS16445 Genome accession   NZ_CP069061
Coordinates   3227231..3227920 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain F6     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3222231..3232920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE45_RS16410 (JNE45_16410) - 3222309..3222791 (-) 483 WP_144472023.1 flagellar protein FlgN -
  JNE45_RS16415 (JNE45_16415) flgM 3222810..3223073 (-) 264 WP_095409676.1 flagellar biosynthesis anti-sigma factor FlgM -
  JNE45_RS16420 (JNE45_16420) - 3223153..3223572 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  JNE45_RS16425 (JNE45_16425) comFC 3223629..3224315 (-) 687 WP_186437285.1 ComF family protein Machinery gene
  JNE45_RS16430 (JNE45_16430) - 3224312..3224605 (-) 294 WP_041088040.1 late competence development ComFB family protein -
  JNE45_RS16435 (JNE45_16435) comFA 3224655..3226052 (-) 1398 WP_274382373.1 DEAD/DEAH box helicase Machinery gene
  JNE45_RS16440 (JNE45_16440) - 3226173..3227015 (-) 843 WP_203128907.1 DegV family protein -
  JNE45_RS16445 (JNE45_16445) degU 3227231..3227920 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  JNE45_RS16450 (JNE45_16450) degS 3227985..3229160 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  JNE45_RS16455 (JNE45_16455) - 3229380..3230048 (+) 669 WP_012011434.1 YigZ family protein -
  JNE45_RS16460 (JNE45_16460) - 3230033..3231124 (+) 1092 WP_095409678.1 LCP family protein -
  JNE45_RS16465 (JNE45_16465) - 3231160..3232227 (-) 1068 WP_048237563.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=532072 JNE45_RS16445 WP_008348273.1 3227231..3227920(-) (degU) [Bacillus safensis strain F6]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=532072 JNE45_RS16445 WP_008348273.1 3227231..3227920(-) (degU) [Bacillus safensis strain F6]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTAAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCCTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGTTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996