Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   JNE45_RS16435 Genome accession   NZ_CP069061
Coordinates   3224655..3226052 (-) Length   465 a.a.
NCBI ID   WP_274382373.1    Uniprot ID   -
Organism   Bacillus safensis strain F6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3219655..3231052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE45_RS16400 (JNE45_16400) flgL 3219855..3220763 (-) 909 WP_203128904.1 flagellar hook-associated protein FlgL -
  JNE45_RS16405 (JNE45_16405) flgK 3220773..3222293 (-) 1521 WP_203128905.1 flagellar hook-associated protein FlgK -
  JNE45_RS16410 (JNE45_16410) - 3222309..3222791 (-) 483 WP_144472023.1 flagellar protein FlgN -
  JNE45_RS16415 (JNE45_16415) flgM 3222810..3223073 (-) 264 WP_095409676.1 flagellar biosynthesis anti-sigma factor FlgM -
  JNE45_RS16420 (JNE45_16420) - 3223153..3223572 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  JNE45_RS16425 (JNE45_16425) comFC 3223629..3224315 (-) 687 WP_186437285.1 ComF family protein Machinery gene
  JNE45_RS16430 (JNE45_16430) - 3224312..3224605 (-) 294 WP_041088040.1 late competence development ComFB family protein -
  JNE45_RS16435 (JNE45_16435) comFA 3224655..3226052 (-) 1398 WP_274382373.1 DEAD/DEAH box helicase Machinery gene
  JNE45_RS16440 (JNE45_16440) - 3226173..3227015 (-) 843 WP_203128907.1 DegV family protein -
  JNE45_RS16445 (JNE45_16445) degU 3227231..3227920 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  JNE45_RS16450 (JNE45_16450) degS 3227985..3229160 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  JNE45_RS16455 (JNE45_16455) - 3229380..3230048 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53208.99 Da        Isoelectric Point: 9.9882

>NTDB_id=532071 JNE45_RS16435 WP_274382373.1 3224655..3226052(-) (comFA) [Bacillus safensis strain F6]
MNMDKAMELKRHLYSRHLLTVETRCAQSNLDWLEEKGLVNRTPAIERKADGFTCYRCGVSHKRYFAHSSCEECQKDCVYC
RSCIMMGKATECGFLYEWTGPKMVETYRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGIRIAVLYGGSSQRFQIAPLVIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKARRKNGGVRIYLSATPSKKMTIEVSRGKLEAIKIPLRFHQQPLPVPTFQWIGHWKKKLKKKQLPSKVMNWMQ
RHIANKRRVLLFVPSIAVMKKATKILREHSLNVEGVSADDPDRKQKVQHFRDYAYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKNHIVKMNDTAAKEFTEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=532071 JNE45_RS16435 WP_274382373.1 3224655..3226052(-) (comFA) [Bacillus safensis strain F6]
TTGAACATGGACAAAGCAATGGAACTAAAGCGGCATCTGTATTCACGCCATCTGCTCACTGTTGAAACAAGGTGCGCACA
GTCCAATTTAGATTGGCTGGAGGAGAAAGGCTTAGTTAATCGAACACCTGCCATTGAGAGGAAAGCAGATGGTTTTACAT
GCTACCGGTGTGGTGTATCACACAAGCGGTACTTTGCTCACTCTTCATGTGAAGAGTGTCAAAAGGATTGTGTGTACTGT
AGGTCATGCATCATGATGGGAAAAGCAACTGAATGTGGATTTCTTTATGAATGGACGGGTCCAAAAATGGTAGAAACATA
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCATCAGAAAGAATGATCGAAGCTATTAAAA
ACAAATTTGATCTACTCGTCTGGGCGGTTTGCGGAGCAGGAAAAACGGAAGTGCTTTTTCATGGAATTGAATATGCGTTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCACGGCTTAGAAAAGCATT
TCAAGGGATAAGAATAGCCGTACTTTATGGAGGCAGTTCACAAAGGTTTCAAATAGCACCGCTTGTGATCGCCACAACCC
ACCAGCTGATGAGATACAAAAATGCATTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAA
CGTCTCCAATTTGCTGTTCTAAAGGCGAGGAGAAAGAACGGAGGGGTTAGGATATATTTAAGTGCGACACCCTCTAAAAA
AATGACGATAGAGGTTTCTCGTGGAAAACTGGAAGCGATAAAAATTCCTCTGCGTTTTCACCAGCAACCATTACCCGTCC
CGACCTTTCAATGGATCGGACATTGGAAAAAGAAATTAAAAAAGAAGCAGCTTCCTTCTAAAGTGATGAATTGGATGCAG
AGACATATTGCCAATAAGAGAAGAGTATTACTTTTTGTTCCTTCTATTGCTGTCATGAAGAAGGCAACGAAGATTCTTCG
AGAACACTCCTTAAACGTAGAGGGAGTATCTGCCGATGATCCAGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
CATACGATGTACTAGTTACAACCACTATTTTAGAAAGAGGCGTAACCATACCAAATGTTCAAGTAGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGAAGAGTGGGCAGACATCCCGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAATCATATCGTAAAAATGAATGATACGGCTG
CAAAAGAGTTTACTGAAAAACAGTGTGGCTTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-265)

Helicase conserved C-terminal domain (Helicase_C)

(324-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.193

98.065

0.512