Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JNE45_RS08360 Genome accession   NZ_CP069061
Coordinates   1663446..1664696 (+) Length   416 a.a.
NCBI ID   WP_203129828.1    Uniprot ID   -
Organism   Bacillus safensis strain F6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1658446..1669696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNE45_RS08335 (JNE45_08335) ymfI 1659864..1660595 (+) 732 WP_095408545.1 elongation factor P 5-aminopentanone reductase -
  JNE45_RS08340 (JNE45_08340) - 1660669..1660926 (+) 258 WP_095408546.1 DUF3243 domain-containing protein -
  JNE45_RS08345 (JNE45_08345) - 1661058..1661849 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  JNE45_RS08350 (JNE45_08350) - 1661873..1662772 (+) 900 WP_095408547.1 helix-turn-helix domain-containing protein -
  JNE45_RS08355 (JNE45_08355) pgsA 1662848..1663429 (+) 582 WP_047202208.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JNE45_RS08360 (JNE45_08360) cinA 1663446..1664696 (+) 1251 WP_203129828.1 competence/damage-inducible protein A Machinery gene
  JNE45_RS08365 (JNE45_08365) recA 1664875..1665918 (+) 1044 WP_047202210.1 recombinase RecA Machinery gene
  JNE45_RS08370 (JNE45_08370) - 1666062..1667237 (+) 1176 WP_203129829.1 serine hydrolase domain-containing protein -
  JNE45_RS08375 (JNE45_08375) rny 1667471..1669033 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45689.77 Da        Isoelectric Point: 4.8006

>NTDB_id=532046 JNE45_RS08360 WP_203129828.1 1663446..1664696(+) (cinA) [Bacillus safensis strain F6]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETETKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQILG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLYHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=532046 JNE45_RS08360 WP_203129828.1 1663446..1664696(+) (cinA) [Bacillus safensis strain F6]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACTAAAGATGACTTA
ACAAAAGAAACGATTGCGAGCACGCTCGGGAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCGAAAGACCGGCCGCGATATGTCACCGAACAACCGTAAACAGGCGCTCGTTCTAGAAGGATCTGATGTGCTTGTGAACC
GTTTCGGGATGGCCCCAGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAACTG
CACCCGATGTTTGAAAATGAGGCAAAGCCGCTGATTTCTGAGAAACTTGGCTTAAAGGAAAAAATCGTGTCTGTTGTTCT
GCGTTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGACTTAATTGATGCTCAAACGAATCCGACGATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTAACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAACGAAAATTTTAGCTCGGGTAGGTGAGTATTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCATGAACACGGAAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAACAGCAGATACTTGGC
TGCCGGGAGGAAACATTGTCTTCCCATGGCGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCATGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCGACAAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCGGGCATTCGAAAGCGT
GCTGTGAAATATGGTCTGTATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.458

99.76

0.743
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.478
  cinA Streptococcus pneumoniae R6

47.268

100

0.478
  cinA Streptococcus pneumoniae D39

47.031

100

0.476
  cinA Streptococcus suis isolate S10

41.379

97.596

0.404