Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LMOSLCC2376_RS06790 Genome accession   NC_018590
Coordinates   1371996..1373240 (+) Length   414 a.a.
NCBI ID   WP_003730598.1    Uniprot ID   A0A5D5H851
Organism   Listeria monocytogenes SLCC2376     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1366996..1378240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMOSLCC2376_RS06770 (LMOSLCC2376_1348) yfmH 1368170..1369456 (+) 1287 WP_003730601.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LMOSLCC2376_RS06775 (LMOSLCC2376_1349) ymfI 1369549..1370280 (+) 732 WP_003730600.1 elongation factor P 5-aminopentanone reductase -
  LMOSLCC2376_RS06780 (LMOSLCC2376_1350) - 1370331..1371260 (+) 930 WP_003730599.1 helix-turn-helix domain-containing protein -
  LMOSLCC2376_RS06785 (LMOSLCC2376_1351) pgsA 1371351..1371929 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LMOSLCC2376_RS06790 (LMOSLCC2376_1352) cinA 1371996..1373240 (+) 1245 WP_003730598.1 competence/damage-inducible protein A Machinery gene
  LMOSLCC2376_RS06795 (LMOSLCC2376_1353) recA 1373513..1374559 (+) 1047 WP_003725961.1 recombinase RecA Machinery gene
  LMOSLCC2376_RS06800 (LMOSLCC2376_1354) rny 1374860..1376422 (+) 1563 WP_003738907.1 ribonuclease Y -
  LMOSLCC2376_RS06805 (LMOSLCC2376_1355) - 1376536..1377033 (+) 498 WP_003736573.1 GNAT family N-acetyltransferase -
  LMOSLCC2376_RS06810 (LMOSLCC2376_1356) - 1377038..1377841 (+) 804 WP_003721906.1 TIGR00282 family metallophosphoesterase -
  LMOSLCC2376_RS06815 (LMOSLCC2376_1357) - 1377858..1378220 (+) 363 WP_003721907.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45649.81 Da        Isoelectric Point: 4.6526

>NTDB_id=53077 LMOSLCC2376_RS06790 WP_003730598.1 1371996..1373240(+) (cinA) [Listeria monocytogenes SLCC2376]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPARLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMNKINEYFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKDT
EEEILRRDGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGYETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=53077 LMOSLCC2376_RS06790 WP_003730598.1 1371996..1373240(+) (cinA) [Listeria monocytogenes SLCC2376]
TTGGCAAGTGCGGAAATCATTGCTGTAGGAACAGAACTATTACTTGGACAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCAGACGGAATATATGTATATCATCACACGGTAGTTGGAGATAATCCGGCGCGTTTAAAAGAAGTAA
TTGAAATCGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACAAAACAA
ATCTTAGCTGCTCATCTACAAAAGCAATTAGTGGAAGATGAATACCATATGAATAAAATTAATGAGTATTTTACTTCTAG
GAATAGGACTATGACCGAAAATAATAAATTACAAGCGGTTATTATTGAAGATTCCATCGTATTAAATAATGATTTTGGCT
TTGCGGCTGGAATGTACTTAAGAGAAAACAATCATACTTACGTTTTACTACCAGGGCCACCATCTGAAATGAAACCAATG
TTTACAAGCTATGCTAACCCATTACTTTTAAGCGAAAGTGGTGATCAAAACATTTTAGAATCCAAAATTATGCGCTTTTT
CGGTATTGGAGAATCACAATTAGCTGCGGATTTAAATGATTTGATTGTCACACAAGTCAACCCGACGATTGCGACCTATG
CTGGTGATAATGAAGTCGTGGTTCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGGCTTGTAAAGGATACC
GAGGAAGAAATATTGCGCCGAGATGGTACCTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCTGCAGAAAGTTTCACTGCTGGTTTGTTCCAAGCAGAAATTGCCCGCTTTC
CTGGCATTTCGAAAATTTTCAAGGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCAAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCAGATAGTTTAGAAGGTCATCCTGCTGGTACTATTTGGATTGGGT
TAAGCGTTAAAGGTTATGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGCCGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATTTTTAGACGCGAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D5H851

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.345

98.792

0.507
  cinA Streptococcus pneumoniae TIGR4

49.048

100

0.498
  cinA Streptococcus mitis SK321

48.926

100

0.495
  cinA Streptococcus mitis NCTC 12261

48.687

100

0.493
  cinA Streptococcus pneumoniae Rx1

48.333

100

0.49
  cinA Streptococcus pneumoniae R6

48.333

100

0.49
  cinA Streptococcus pneumoniae D39

48.095

100

0.488
  cinA Streptococcus mutans UA159

48.544

99.517

0.483
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386

Multiple sequence alignment