Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JMB28_RS06975 Genome accession   NZ_CP068712
Coordinates   1453746..1454063 (+) Length   105 a.a.
NCBI ID   WP_039068405.1    Uniprot ID   -
Organism   Staphylococcus shinii strain 14AME19     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1448746..1459063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMB28_RS06945 (JMB28_06945) - 1449077..1449271 (+) 195 WP_039068429.1 YqgQ family protein -
  JMB28_RS06950 (JMB28_06950) - 1449679..1450665 (+) 987 WP_039068409.1 glucokinase -
  JMB28_RS06955 (JMB28_06955) - 1450665..1450988 (+) 324 WP_039068408.1 MTH1187 family thiamine-binding protein -
  JMB28_RS06960 (JMB28_06960) - 1450990..1451613 (+) 624 WP_069792155.1 MBL fold metallo-hydrolase -
  JMB28_RS06965 (JMB28_06965) comGA 1451713..1452687 (+) 975 WP_069792154.1 competence type IV pilus ATPase ComGA Machinery gene
  JMB28_RS06970 (JMB28_06970) comGB 1452659..1453726 (+) 1068 WP_069792153.1 competence type IV pilus assembly protein ComGB -
  JMB28_RS06975 (JMB28_06975) comGC 1453746..1454063 (+) 318 WP_039068405.1 competence type IV pilus major pilin ComGC Machinery gene
  JMB28_RS06980 (JMB28_06980) comGD 1454086..1454487 (+) 402 WP_241962773.1 competence type IV pilus minor pilin ComGD -
  JMB28_RS06985 (JMB28_06985) - 1454474..1454773 (+) 300 WP_069792151.1 hypothetical protein -
  JMB28_RS06990 (JMB28_06990) comGF 1454745..1455188 (+) 444 WP_039068403.1 competence type IV pilus minor pilin ComGF -
  JMB28_RS06995 (JMB28_06995) - 1455368..1455868 (+) 501 WP_069792249.1 shikimate kinase -
  JMB28_RS07000 (JMB28_07000) gcvT 1456053..1457144 (+) 1092 WP_107549069.1 glycine cleavage system aminomethyltransferase GcvT -
  JMB28_RS07005 (JMB28_07005) gcvPA 1457162..1458514 (+) 1353 WP_039068400.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11801.98 Da        Isoelectric Point: 9.0956

>NTDB_id=530609 JMB28_RS06975 WP_039068405.1 1453746..1454063(+) (comGC) [Staphylococcus shinii strain 14AME19]
MNIFKNKFNKKAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTKSCEAQLKMIDSQIEAYSLKFNKKPSTMEELVNEG
YIKENQKQCKSGALISIDNGEAVAS

Nucleotide


Download         Length: 318 bp        

>NTDB_id=530609 JMB28_RS06975 WP_039068405.1 1453746..1454063(+) (comGC) [Staphylococcus shinii strain 14AME19]
ATGAATATTTTTAAAAACAAATTTAATAAAAAAGCATTCACGCTTATTGAAATGTTACTGGTTTTGCTAATAATAAGTTT
ATTATTAATATTAATTATACCTAATATAGCTAAACAATCCTCGCATATACAGACTAAGAGTTGTGAAGCACAGCTTAAAA
TGATAGATAGTCAAATTGAAGCCTATAGCTTAAAGTTTAATAAGAAGCCATCTACTATGGAAGAACTCGTTAATGAAGGT
TATATTAAAGAGAATCAAAAGCAATGTAAATCAGGCGCTTTAATATCAATTGACAATGGTGAAGCAGTTGCTAGTTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

70.297

96.19

0.676
  comGC Staphylococcus aureus N315

70.297

96.19

0.676
  comYC Streptococcus gordonii str. Challis substr. CH1

45.055

86.667

0.39
  comGC/cglC Streptococcus mitis NCTC 12261

46.512

81.905

0.381
  comGC/cglC Streptococcus pneumoniae D39

43.82

84.762

0.371
  comGC/cglC Streptococcus pneumoniae R6

43.82

84.762

0.371
  comGC/cglC Streptococcus pneumoniae TIGR4

43.82

84.762

0.371
  comGC/cglC Streptococcus pneumoniae Rx1

43.82

84.762

0.371
  comGC Bacillus subtilis subsp. subtilis str. 168

41.489

89.524

0.371