Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | JMB28_RS06965 | Genome accession | NZ_CP068712 |
| Coordinates | 1451713..1452687 (+) | Length | 324 a.a. |
| NCBI ID | WP_069792154.1 | Uniprot ID | - |
| Organism | Staphylococcus shinii strain 14AME19 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1446713..1457687
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMB28_RS06930 (JMB28_06930) | rpmG | 1446804..1446953 (+) | 150 | WP_002483181.1 | 50S ribosomal protein L33 | - |
| JMB28_RS06935 (JMB28_06935) | - | 1447082..1447624 (+) | 543 | WP_039068411.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| JMB28_RS06940 (JMB28_06940) | - | 1447636..1449093 (+) | 1458 | WP_069792156.1 | rhomboid family intramembrane serine protease | - |
| JMB28_RS06945 (JMB28_06945) | - | 1449077..1449271 (+) | 195 | WP_039068429.1 | YqgQ family protein | - |
| JMB28_RS06950 (JMB28_06950) | - | 1449679..1450665 (+) | 987 | WP_039068409.1 | glucokinase | - |
| JMB28_RS06955 (JMB28_06955) | - | 1450665..1450988 (+) | 324 | WP_039068408.1 | MTH1187 family thiamine-binding protein | - |
| JMB28_RS06960 (JMB28_06960) | - | 1450990..1451613 (+) | 624 | WP_069792155.1 | MBL fold metallo-hydrolase | - |
| JMB28_RS06965 (JMB28_06965) | comGA | 1451713..1452687 (+) | 975 | WP_069792154.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| JMB28_RS06970 (JMB28_06970) | comGB | 1452659..1453726 (+) | 1068 | WP_069792153.1 | competence type IV pilus assembly protein ComGB | - |
| JMB28_RS06975 (JMB28_06975) | comGC | 1453746..1454063 (+) | 318 | WP_039068405.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| JMB28_RS06980 (JMB28_06980) | comGD | 1454086..1454487 (+) | 402 | WP_241962773.1 | competence type IV pilus minor pilin ComGD | - |
| JMB28_RS06985 (JMB28_06985) | - | 1454474..1454773 (+) | 300 | WP_069792151.1 | hypothetical protein | - |
| JMB28_RS06990 (JMB28_06990) | comGF | 1454745..1455188 (+) | 444 | WP_039068403.1 | competence type IV pilus minor pilin ComGF | - |
| JMB28_RS06995 (JMB28_06995) | - | 1455368..1455868 (+) | 501 | WP_069792249.1 | shikimate kinase | - |
| JMB28_RS07000 (JMB28_07000) | gcvT | 1456053..1457144 (+) | 1092 | WP_107549069.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37137.39 Da Isoelectric Point: 9.3572
>NTDB_id=530608 JMB28_RS06965 WP_069792154.1 1451713..1452687(+) (comGA) [Staphylococcus shinii strain 14AME19]
MKLLFNSMIEKAINSNASDIHFIPADKEVLIKFRIGDELKSIETLQLNNYLKLLTYMKYQAGLDVSKHNTAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLMYAKEHLNLN
IITIEEPVEQLINGIIQISLNEKAGINYENSFKAILRCDPDIILIGEIRDANVAKYVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGITVQQLIQSIVSILNQRLITTNENKRELVYEQITKADIYHFFKNSYTLPEGFHNLSYKLNKMSKEGMICETSM
ERYL
MKLLFNSMIEKAINSNASDIHFIPADKEVLIKFRIGDELKSIETLQLNNYLKLLTYMKYQAGLDVSKHNTAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLMYAKEHLNLN
IITIEEPVEQLINGIIQISLNEKAGINYENSFKAILRCDPDIILIGEIRDANVAKYVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGITVQQLIQSIVSILNQRLITTNENKRELVYEQITKADIYHFFKNSYTLPEGFHNLSYKLNKMSKEGMICETSM
ERYL
Nucleotide
Download Length: 975 bp
>NTDB_id=530608 JMB28_RS06965 WP_069792154.1 1451713..1452687(+) (comGA) [Staphylococcus shinii strain 14AME19]
TTGAAATTATTGTTTAATAGTATGATTGAAAAGGCAATTAATTCTAACGCGTCAGATATTCATTTTATCCCTGCAGATAA
AGAAGTTTTGATTAAATTTAGAATCGGTGACGAATTGAAGTCAATAGAGACATTGCAATTAAATAATTATTTGAAATTAC
TAACCTATATGAAATATCAAGCTGGCTTAGATGTCTCTAAACATAATACTGCACAGAGTGGTAGATATATTTATAAATTA
AAGCAAATTTATTTCCTTAGAATTTCTACGCTTCCTTTATCTCTTGGAAATGAAAGTTGCGTTATTAGAATTATCCCGCA
ATACTTTCAAAAGCATAAAAACAATCAGAACATAACTCATCTATACAATCTAATGAATAAAAAACAAGGATTAATTTTAT
TGAGTGGTCCTACTGGCTCAGGAAAGAGTACGTTAATGTATCACATGTTGATGTATGCTAAAGAGCATTTAAATTTAAAT
ATTATTACGATTGAAGAACCTGTTGAACAATTAATAAATGGTATAATACAAATATCATTAAATGAAAAAGCAGGGATAAA
TTATGAGAATTCTTTTAAGGCGATACTGCGCTGTGATCCAGATATTATTTTAATAGGAGAAATAAGAGATGCAAACGTAG
CTAAATATGTTATACAAGCCAGTTTAAGTGGTCATTTAGTGCTTTCGACAATACATGCCAGTAATTGCAAAGGTGTAATA
TTAAGGCTACTAGAAATGGGTATAACAGTCCAACAGCTTATACAGTCAATCGTTAGCATATTAAATCAAAGGCTTATCAC
TACTAACGAAAATAAAAGAGAGCTTGTATATGAACAGATAACCAAAGCAGATATCTATCACTTCTTTAAAAATAGCTATA
CATTACCTGAAGGTTTCCATAATTTGTCTTATAAATTAAATAAAATGTCAAAAGAGGGAATGATTTGTGAAACATCAATG
GAACGTTATCTCTAA
TTGAAATTATTGTTTAATAGTATGATTGAAAAGGCAATTAATTCTAACGCGTCAGATATTCATTTTATCCCTGCAGATAA
AGAAGTTTTGATTAAATTTAGAATCGGTGACGAATTGAAGTCAATAGAGACATTGCAATTAAATAATTATTTGAAATTAC
TAACCTATATGAAATATCAAGCTGGCTTAGATGTCTCTAAACATAATACTGCACAGAGTGGTAGATATATTTATAAATTA
AAGCAAATTTATTTCCTTAGAATTTCTACGCTTCCTTTATCTCTTGGAAATGAAAGTTGCGTTATTAGAATTATCCCGCA
ATACTTTCAAAAGCATAAAAACAATCAGAACATAACTCATCTATACAATCTAATGAATAAAAAACAAGGATTAATTTTAT
TGAGTGGTCCTACTGGCTCAGGAAAGAGTACGTTAATGTATCACATGTTGATGTATGCTAAAGAGCATTTAAATTTAAAT
ATTATTACGATTGAAGAACCTGTTGAACAATTAATAAATGGTATAATACAAATATCATTAAATGAAAAAGCAGGGATAAA
TTATGAGAATTCTTTTAAGGCGATACTGCGCTGTGATCCAGATATTATTTTAATAGGAGAAATAAGAGATGCAAACGTAG
CTAAATATGTTATACAAGCCAGTTTAAGTGGTCATTTAGTGCTTTCGACAATACATGCCAGTAATTGCAAAGGTGTAATA
TTAAGGCTACTAGAAATGGGTATAACAGTCCAACAGCTTATACAGTCAATCGTTAGCATATTAAATCAAAGGCTTATCAC
TACTAACGAAAATAAAAGAGAGCTTGTATATGAACAGATAACCAAAGCAGATATCTATCACTTCTTTAAAAATAGCTATA
CATTACCTGAAGGTTTCCATAATTTGTCTTATAAATTAAATAAAATGTCAAAAGAGGGAATGATTTGTGAAACATCAATG
GAACGTTATCTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
62.654 |
100 |
0.627 |
| comGA | Staphylococcus aureus N315 |
62.654 |
100 |
0.627 |