Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LLUC073_RS10720 Genome accession   NZ_CP068698
Coordinates   2068483..2068872 (-) Length   129 a.a.
NCBI ID   WP_011675463.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UC073     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2060552..2068872 2068483..2068872 within 0


Gene organization within MGE regions


Location: 2060552..2068872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC073_RS10680 (LLUC073_10425) ricT 2060552..2061334 (-) 783 WP_011834464.1 stage 0 sporulation family protein -
  LLUC073_RS10685 (LLUC073_10430) - 2061384..2062244 (-) 861 WP_011675470.1 DNA polymerase III subunit delta' -
  LLUC073_RS10690 (LLUC073_10435) tmk 2062377..2063012 (-) 636 WP_015082045.1 dTMP kinase -
  LLUC073_RS10695 (LLUC073_10440) yycF 2063190..2063891 (+) 702 WP_003131580.1 response regulator YycF -
  LLUC073_RS10700 (LLUC073_10445) - 2063884..2065311 (+) 1428 WP_011675468.1 cell wall metabolism sensor histidine kinase WalK -
  LLUC073_RS10705 (LLUC073_10450) - 2065501..2066313 (+) 813 WP_282670881.1 MBL fold metallo-hydrolase -
  LLUC073_RS10710 (LLUC073_10455) groL 2066365..2067993 (-) 1629 WP_011675465.1 chaperonin GroEL -
  LLUC073_RS10715 (LLUC073_10460) groES 2068080..2068364 (-) 285 WP_011675464.1 co-chaperone GroES -
  LLUC073_RS10720 (LLUC073_10465) ssbB 2068483..2068872 (-) 390 WP_011675463.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14650.71 Da        Isoelectric Point: 6.4793

>NTDB_id=530482 LLUC073_RS10720 WP_011675463.1 2068483..2068872(-) (ssbB) [Lactococcus cremoris strain UC073]
MNKTMLIGHLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESAVNFEELLLEADELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=530482 LLUC073_RS10720 WP_011675463.1 2068483..2068872(-) (ssbB) [Lactococcus cremoris strain UC073]
ATGAATAAAACCATGTTGATTGGTCATTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

96.899

100

0.969
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssbA Streptococcus mutans UA159

55.385

100

0.558