Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | LLUC047_RS02690 | Genome accession | NZ_CP068658 |
| Coordinates | 517690..518079 (+) | Length | 129 a.a. |
| NCBI ID | WP_011675463.1 | Uniprot ID | - |
| Organism | Lactococcus cremoris strain UC047 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 512690..523079
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLUC047_RS02665 (LLUC047_02640) | pepA | 513549..514616 (-) | 1068 | WP_011675458.1 | glutamyl aminopeptidase | - |
| LLUC047_RS02670 (LLUC047_02645) | - | 514719..515003 (+) | 285 | WP_011675459.1 | hypothetical protein | - |
| LLUC047_RS02675 (LLUC047_02650) | - | 515048..515365 (+) | 318 | WP_011675460.1 | thioredoxin family protein | - |
| LLUC047_RS02680 (LLUC047_02655) | ytpR | 515471..516097 (+) | 627 | WP_011675461.1 | YtpR family tRNA-binding protein | - |
| LLUC047_RS02685 (LLUC047_02660) | nox | 516259..517599 (+) | 1341 | WP_021216210.1 | H2O-forming NADH oxidase | - |
| LLUC047_RS02690 (LLUC047_02665) | ssbB | 517690..518079 (+) | 390 | WP_011675463.1 | single-stranded DNA-binding protein | Machinery gene |
| LLUC047_RS02695 (LLUC047_02670) | groES | 518198..518482 (+) | 285 | WP_011675464.1 | co-chaperone GroES | - |
| LLUC047_RS02700 (LLUC047_02675) | groL | 518569..520197 (+) | 1629 | WP_011675465.1 | chaperonin GroEL | - |
| LLUC047_RS02705 (LLUC047_02680) | - | 520249..521061 (-) | 813 | WP_021216212.1 | MBL fold metallo-hydrolase | - |
| LLUC047_RS02710 (LLUC047_02685) | - | 521251..522678 (-) | 1428 | WP_021216213.1 | cell wall metabolism sensor histidine kinase WalK | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14650.71 Da Isoelectric Point: 6.4793
>NTDB_id=530247 LLUC047_RS02690 WP_011675463.1 517690..518079(+) (ssbB) [Lactococcus cremoris strain UC047]
MNKTMLIGHLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESAVNFEELLLEADELPF
MNKTMLIGHLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESAVNFEELLLEADELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=530247 LLUC047_RS02690 WP_011675463.1 517690..518079(+) (ssbB) [Lactococcus cremoris strain UC047]
ATGAATAAAACCATGTTGATTGGTCATTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA
ATGAATAAAACCATGTTGATTGGTCATTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
96.899 |
100 |
0.969 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60 |
100 |
0.605 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus mitis SK321 |
55.385 |
100 |
0.558 |
| ssbA | Streptococcus mutans UA159 |
55.385 |
100 |
0.558 |