Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JHS79_RS17285 Genome accession   NZ_CP068641
Coordinates   3481270..3482382 (-) Length   370 a.a.
NCBI ID   WP_025540318.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain VP157     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3476270..3487382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS79_RS17255 (JHS79_17115) hemF 3476730..3477647 (-) 918 WP_024699626.1 oxygen-dependent coproporphyrinogen oxidase -
  JHS79_RS17260 (JHS79_17120) - 3477695..3478252 (-) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  JHS79_RS17265 (JHS79_17125) purE 3478453..3478938 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  JHS79_RS17270 (JHS79_17130) - 3478943..3480076 (+) 1134 WP_140126224.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  JHS79_RS17275 (JHS79_17135) - 3480140..3480709 (-) 570 WP_005386647.1 type I DNA topoisomerase -
  JHS79_RS17280 (JHS79_17140) - 3480788..3481267 (-) 480 WP_005461440.1 DUF494 family protein -
  JHS79_RS17285 (JHS79_17145) dprA 3481270..3482382 (-) 1113 WP_025540318.1 DNA-processing protein DprA Machinery gene
  JHS79_RS17290 (JHS79_17150) - 3482366..3483460 (-) 1095 WP_140126223.1 LysM peptidoglycan-binding domain-containing protein -
  JHS79_RS17295 (JHS79_17155) def 3483599..3484117 (+) 519 WP_005461416.1 peptide deformylase -
  JHS79_RS17300 (JHS79_17160) fmt 3484151..3485098 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  JHS79_RS17305 (JHS79_17165) rsmB 3485179..3486462 (+) 1284 WP_015297514.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39886.50 Da        Isoelectric Point: 6.4129

>NTDB_id=530184 JHS79_RS17285 WP_025540318.1 3481270..3482382(-) (dprA) [Vibrio parahaemolyticus strain VP157]
MKPRNSDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=530184 JHS79_RS17285 WP_025540318.1 3481270..3482382(-) (dprA) [Vibrio parahaemolyticus strain VP157]
ATGAAACCACGCAATAGCGACAGTGACCTTGCTGCCTGGCTGAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATCTTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.324

100

0.843
  dprA Vibrio cholerae strain A1552

58.808

99.73

0.586
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Neisseria meningitidis strain C311

37.374

100

0.4
  dprA Neisseria meningitidis MC58

37.374

100

0.4
  dprA Neisseria gonorrhoeae MS11

35.533

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.279

100

0.376