Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JHS95_RS16280 Genome accession   NZ_CP068627
Coordinates   3372757..3373869 (-) Length   370 a.a.
NCBI ID   WP_237301884.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LH80     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3367757..3378869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS95_RS16250 (JHS95_16150) hemF 3368218..3369135 (-) 918 WP_024699626.1 oxygen-dependent coproporphyrinogen oxidase -
  JHS95_RS16255 (JHS95_16155) - 3369183..3369740 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  JHS95_RS16260 (JHS95_16160) purE 3369940..3370425 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  JHS95_RS16265 (JHS95_16165) - 3370430..3371557 (+) 1128 WP_025537608.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  JHS95_RS16270 (JHS95_16170) - 3371627..3372196 (-) 570 WP_025537610.1 type I DNA topoisomerase -
  JHS95_RS16275 (JHS95_16175) - 3372275..3372754 (-) 480 WP_005461440.1 DUF494 family protein -
  JHS95_RS16280 (JHS95_16180) dprA 3372757..3373869 (-) 1113 WP_237301884.1 DNA-processing protein DprA Machinery gene
  JHS95_RS16285 (JHS95_16185) - 3373853..3374947 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  JHS95_RS16290 (JHS95_16190) def 3375086..3375604 (+) 519 WP_005379068.1 peptide deformylase -
  JHS95_RS16295 (JHS95_16195) fmt 3375638..3376585 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  JHS95_RS16300 (JHS95_16200) rsmB 3376666..3377949 (+) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39962.59 Da        Isoelectric Point: 6.4133

>NTDB_id=530048 JHS95_RS16280 WP_237301884.1 3372757..3373869(-) (dprA) [Vibrio parahaemolyticus strain LH80]
MKPRNNDSDLVAWLKLSCLPGIGGVKMNKLLAKDTPRNIISSSSEQLYQFGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=530048 JHS95_RS16280 WP_237301884.1 3372757..3373869(-) (dprA) [Vibrio parahaemolyticus strain LH80]
ATGAAACCACGCAATAACGACAGTGACCTTGTTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAGTTCCTCTTCTGAACAGCTCTATCAATTTGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CGCGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGTGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGCTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCGAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.054

100

0.841
  dprA Vibrio cholerae strain A1552

58.649

100

0.586
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

37.626

100

0.403
  dprA Neisseria meningitidis MC58

37.626

100

0.403
  dprA Neisseria gonorrhoeae MS11

36.041

100

0.384
  dprA Neisseria gonorrhoeae strain FA1090

35.787

100

0.381