Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JHS83_RS15490 Genome accession   NZ_CP068622
Coordinates   3304891..3306003 (-) Length   370 a.a.
NCBI ID   WP_140391726.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LH24     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3299891..3311003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHS83_RS15460 (JHS83_15440) hemF 3300346..3301263 (-) 918 WP_029806385.1 oxygen-dependent coproporphyrinogen oxidase -
  JHS83_RS15465 (JHS83_15445) - 3301311..3301868 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  JHS83_RS15470 (JHS83_15450) purE 3302068..3302553 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  JHS83_RS15475 (JHS83_15455) - 3302558..3303697 (+) 1140 WP_140391727.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  JHS83_RS15480 (JHS83_15460) - 3303761..3304330 (-) 570 WP_064484123.1 type I DNA topoisomerase -
  JHS83_RS15485 (JHS83_15465) - 3304409..3304888 (-) 480 WP_005461440.1 DUF494 family protein -
  JHS83_RS15490 (JHS83_15470) dprA 3304891..3306003 (-) 1113 WP_140391726.1 DNA-processing protein DprA Machinery gene
  JHS83_RS15495 (JHS83_15475) - 3305987..3307081 (-) 1095 WP_025636856.1 LysM peptidoglycan-binding domain-containing protein -
  JHS83_RS15500 (JHS83_15480) def 3307220..3307738 (+) 519 WP_005461416.1 peptide deformylase -
  JHS83_RS15505 (JHS83_15485) fmt 3307772..3308719 (+) 948 WP_021453792.1 methionyl-tRNA formyltransferase -
  JHS83_RS15510 (JHS83_15490) rsmB 3308800..3310083 (+) 1284 WP_031848633.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39826.44 Da        Isoelectric Point: 6.2334

>NTDB_id=530003 JHS83_RS15490 WP_140391726.1 3304891..3306003(-) (dprA) [Vibrio parahaemolyticus strain LH24]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQLVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=530003 JHS83_RS15490 WP_140391726.1 3304891..3306003(-) (dprA) [Vibrio parahaemolyticus strain LH24]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CTCGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGAGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCTAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAGAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

47.453

100

0.478
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Neisseria meningitidis strain C311

37.692

100

0.397
  dprA Neisseria meningitidis MC58

37.692

100

0.397
  dprA Neisseria gonorrhoeae MS11

35.825

100

0.376
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.373