Detailed information
Bioinformatically predicted
Overview
| Name | cinA | Type | Machinery gene |
| Locus tag | LMOSLCC2540_RS07220 | Genome accession | NC_018586 |
| Coordinates | 1433148..1434392 (+) | Length | 414 a.a. |
| NCBI ID | WP_014929597.1 | Uniprot ID | - |
| Organism | Listeria monocytogenes SLCC2540 | ||
| Function | unknown (predicted from homology) Unclear |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1417062..1479202 | 1433148..1434392 | within | 0 |
Gene organization within MGE regions
Location: 1417062..1479202
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMOSLCC2540_RS07155 (LMOSLCC2540_1435) | - | 1417108..1418067 (-) | 960 | WP_003725947.1 | rhodanese-related sulfurtransferase | - |
| LMOSLCC2540_RS07160 (LMOSLCC2540_1436) | - | 1418318..1419244 (+) | 927 | WP_003727465.1 | YitT family protein | - |
| LMOSLCC2540_RS07165 (LMOSLCC2540_1437) | - | 1419395..1421668 (+) | 2274 | WP_009917629.1 | DNA translocase FtsK | - |
| LMOSLCC2540_RS07170 (LMOSLCC2540_1438) | proG | 1421702..1422541 (-) | 840 | WP_003725950.1 | pyrroline-5-carboxylate reductase ProG | - |
| LMOSLCC2540_RS07175 (LMOSLCC2540_1440) | - | 1422894..1423967 (+) | 1074 | WP_003722514.1 | BMP family lipoprotein | - |
| LMOSLCC2540_RS07180 (LMOSLCC2540_1441) | - | 1424399..1425940 (+) | 1542 | WP_003727463.1 | ABC transporter ATP-binding protein | - |
| LMOSLCC2540_RS07185 (LMOSLCC2540_1442) | - | 1425933..1426985 (+) | 1053 | WP_003725954.1 | ABC transporter permease | - |
| LMOSLCC2540_RS07190 (LMOSLCC2540_1443) | - | 1426982..1427932 (+) | 951 | WP_003727462.1 | ABC transporter permease | - |
| LMOSLCC2540_RS07195 (LMOSLCC2540_1444) | yfmF | 1428049..1429341 (+) | 1293 | WP_014929595.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| LMOSLCC2540_RS07200 (LMOSLCC2540_1445) | yfmH | 1429322..1430608 (+) | 1287 | WP_003727460.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| LMOSLCC2540_RS07205 (LMOSLCC2540_1446) | ymfI | 1430700..1431431 (+) | 732 | WP_014929596.1 | elongation factor P 5-aminopentanone reductase | - |
| LMOSLCC2540_RS07210 (LMOSLCC2540_1447) | - | 1431482..1432411 (+) | 930 | WP_003727458.1 | helix-turn-helix domain-containing protein | - |
| LMOSLCC2540_RS07215 (LMOSLCC2540_1448) | pgsA | 1432502..1433080 (+) | 579 | WP_003723921.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| LMOSLCC2540_RS07220 (LMOSLCC2540_1449) | cinA | 1433148..1434392 (+) | 1245 | WP_014929597.1 | competence/damage-inducible protein A | Machinery gene |
| LMOSLCC2540_RS07225 (LMOSLCC2540_1450) | recA | 1434665..1435711 (+) | 1047 | WP_003725961.1 | recombinase RecA | Machinery gene |
| LMOSLCC2540_RS07230 (LMOSLCC2540_1451) | rny | 1436012..1437574 (+) | 1563 | WP_003721904.1 | ribonuclease Y | - |
| LMOSLCC2540_RS07235 (LMOSLCC2540_1452) | - | 1437689..1438186 (+) | 498 | WP_009918755.1 | GNAT family N-acetyltransferase | - |
| LMOSLCC2540_RS07240 (LMOSLCC2540_1453) | - | 1438192..1438995 (+) | 804 | WP_014929598.1 | TIGR00282 family metallophosphoesterase | - |
| LMOSLCC2540_RS07245 (LMOSLCC2540_1454) | - | 1439012..1439374 (+) | 363 | WP_003744056.1 | RicAFT regulatory complex protein RicA family protein | - |
| LMOSLCC2540_RS07250 (LMOSLCC2540_1455) | mutS | 1439485..1442067 (+) | 2583 | WP_003727456.1 | DNA mismatch repair protein MutS | - |
| LMOSLCC2540_RS07255 (LMOSLCC2540_1456) | mutL | 1442087..1443898 (+) | 1812 | WP_014929599.1 | DNA mismatch repair endonuclease MutL | - |
| LMOSLCC2540_RS07260 (LMOSLCC2540_1457) | - | 1443915..1444463 (+) | 549 | WP_003725351.1 | glycerol-3-phosphate responsive antiterminator | - |
| LMOSLCC2540_RS07265 (LMOSLCC2540_1458) | pflB | 1444889..1447120 (+) | 2232 | WP_003725352.1 | formate C-acetyltransferase | - |
| LMOSLCC2540_RS07270 (LMOSLCC2540_1459) | pflA | 1447197..1447942 (+) | 746 | Protein_1440 | pyruvate formate-lyase-activating protein | - |
| LMOSLCC2540_RS07275 (LMOSLCC2540_1460) | - | 1447976..1448506 (-) | 531 | WP_003725353.1 | helix-turn-helix transcriptional regulator | - |
| LMOSLCC2540_RS07280 (LMOSLCC2540_1461) | mdrL | 1448673..1449866 (+) | 1194 | WP_014929601.1 | multidrug efflux MFS transporter MdrL | - |
| LMOSLCC2540_RS07285 (LMOSLCC2540_1462) | - | 1450001..1450549 (+) | 549 | WP_003725355.1 | DUF2975 domain-containing protein | - |
| LMOSLCC2540_RS07290 (LMOSLCC2540_1463) | - | 1450566..1450793 (+) | 228 | WP_003725356.1 | helix-turn-helix domain-containing protein | - |
| LMOSLCC2540_RS07295 | - | 1450833..1451376 (+) | 544 | Protein_1445 | AAA family ATPase | - |
| LMOSLCC2540_RS07300 (LMOSLCC2540_1466) | - | 1451587..1451847 (-) | 261 | WP_014929604.1 | hypothetical protein | - |
| LMOSLCC2540_RS07305 (LMOSLCC2540_1467) | - | 1451893..1452786 (-) | 894 | WP_041176861.1 | tyrosine-type recombinase/integrase | - |
| LMOSLCC2540_RS07310 (LMOSLCC2540_1468) | - | 1453097..1453984 (-) | 888 | WP_014929606.1 | helix-turn-helix domain-containing protein | - |
| LMOSLCC2540_RS07315 (LMOSLCC2540_1469) | - | 1454231..1454599 (-) | 369 | WP_014929607.1 | cystatin-like fold lipoprotein | - |
| LMOSLCC2540_RS07320 (LMOSLCC2540_1470) | - | 1454664..1455254 (-) | 591 | WP_014929608.1 | hypothetical protein | - |
| LMOSLCC2540_RS07325 (LMOSLCC2540_1471) | - | 1455257..1456291 (-) | 1035 | WP_041176862.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| LMOSLCC2540_RS07330 (LMOSLCC2540_1472) | - | 1456288..1458165 (-) | 1878 | WP_014929610.1 | CD3337/EF1877 family mobilome membrane protein | - |
| LMOSLCC2540_RS07335 (LMOSLCC2540_1473) | - | 1458190..1458510 (-) | 321 | WP_014929611.1 | STIV orfB116 family protein | - |
| LMOSLCC2540_RS07340 (LMOSLCC2540_1474) | - | 1458535..1461027 (-) | 2493 | WP_014929612.1 | ATP-binding protein | - |
| LMOSLCC2540_RS07345 (LMOSLCC2540_1475) | - | 1460990..1461445 (-) | 456 | WP_014929613.1 | TcpE family conjugal transfer membrane protein | - |
| LMOSLCC2540_RS07350 (LMOSLCC2540_1476) | - | 1461461..1461688 (-) | 228 | WP_014929614.1 | hypothetical protein | - |
| LMOSLCC2540_RS07355 (LMOSLCC2540_1477) | - | 1461685..1462692 (-) | 1008 | WP_014929615.1 | conjugal transfer protein | - |
| LMOSLCC2540_RS14765 (LMOSLCC2540_1478) | - | 1462823..1464721 (-) | 1899 | WP_014929616.1 | LPXTG cell wall anchor domain-containing protein | - |
| LMOSLCC2540_RS07365 (LMOSLCC2540_1479) | - | 1464885..1466252 (-) | 1368 | WP_014929617.1 | toxin Cry1Ac domain D-VI-related protein | - |
| LMOSLCC2540_RS07370 (LMOSLCC2540_1480) | - | 1466351..1466656 (-) | 306 | WP_014929618.1 | hypothetical protein | - |
| LMOSLCC2540_RS07375 (LMOSLCC2540_1481) | - | 1466664..1466999 (-) | 336 | WP_014929619.1 | hypothetical protein | - |
| LMOSLCC2540_RS07380 (LMOSLCC2540_1482) | - | 1467044..1467301 (-) | 258 | WP_014929620.1 | hypothetical protein | - |
| LMOSLCC2540_RS15110 (LMOSLCC2540_1483) | - | 1467321..1467491 (-) | 171 | WP_014929621.1 | hypothetical protein | - |
| LMOSLCC2540_RS07385 (LMOSLCC2540_1484) | - | 1467485..1467769 (-) | 285 | WP_231852525.1 | DUF3850 domain-containing protein | - |
| LMOSLCC2540_RS07390 (LMOSLCC2540_1485) | - | 1467859..1468866 (-) | 1008 | WP_014929623.1 | replication initiation factor domain-containing protein | - |
| LMOSLCC2540_RS07395 (LMOSLCC2540_1486) | - | 1469057..1469359 (-) | 303 | WP_014929624.1 | hypothetical protein | - |
| LMOSLCC2540_RS07400 (LMOSLCC2540_1487) | - | 1469325..1470707 (-) | 1383 | WP_041176863.1 | cell division protein FtsK | - |
| LMOSLCC2540_RS07405 (LMOSLCC2540_1488) | - | 1470710..1471108 (-) | 399 | WP_014929626.1 | DUF961 family protein | - |
| LMOSLCC2540_RS07410 (LMOSLCC2540_1489) | - | 1471134..1471427 (-) | 294 | WP_014929627.1 | hypothetical protein | - |
| LMOSLCC2540_RS07415 (LMOSLCC2540_1490) | - | 1471572..1472063 (-) | 492 | WP_014929628.1 | antirestriction protein ArdA | - |
| LMOSLCC2540_RS07420 | - | 1472489..1472728 (-) | 240 | WP_041176864.1 | hypothetical protein | - |
| LMOSLCC2540_RS07425 (LMOSLCC2540_1491) | - | 1472978..1474300 (-) | 1323 | WP_014929629.1 | MucBP domain-containing protein | - |
| LMOSLCC2540_RS07430 (LMOSLCC2540_1492) | - | 1474487..1475656 (-) | 1170 | WP_014929630.1 | thiolase family protein | - |
| LMOSLCC2540_RS07435 (LMOSLCC2540_1493) | - | 1475806..1476972 (+) | 1167 | WP_003725360.1 | hydroxymethylglutaryl-CoA synthase | - |
| LMOSLCC2540_RS07440 (LMOSLCC2540_1494) | - | 1476995..1477594 (-) | 600 | WP_003727449.1 | VanZ family protein | - |
| LMOSLCC2540_RS07445 (LMOSLCC2540_1495) | - | 1477664..1478908 (-) | 1245 | WP_003734585.1 | MFS transporter | - |
Sequence
Protein
Download Length: 414 a.a. Molecular weight: 45693.82 Da Isoelectric Point: 4.6123
>NTDB_id=52919 LMOSLCC2540_RS07220 WP_014929597.1 1433148..1434392(+) (cinA) [Listeria monocytogenes SLCC2540]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMNKINEYFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKET
EEEILRREGTFLYGYGEVSLSELVTAMLLENELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGYETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMNKINEYFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKET
EEEILRREGTFLYGYGEVSLSELVTAMLLENELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGYETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN
Nucleotide
Download Length: 1245 bp
>NTDB_id=52919 LMOSLCC2540_RS07220 WP_014929597.1 1433148..1434392(+) (cinA) [Listeria monocytogenes SLCC2540]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACAGAACTATTACTAGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACGGTAGTTGGAGATAACCCAACACGTTTAAAAGAAGTAA
TCGAAATCGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACAAAACAA
ATCTTGGCTGCTCATCTACAAAAGCAATTAGTGGAAGATGAATACCATATGAATAAAATTAATGAGTATTTCACTTCTAG
GAATAGGACTATGACCGAAAATAATAAATTACAAGCGGTTATTATTGAAGATTCCATCGTATTAAATAATGATTTTGGCT
TTGCGGCTGGAATGTACTTAAGAGAAAACAATCATACTTACGTTTTGCTACCAGGTCCACCATCTGAAATGAAACCAATG
TTTACAAGCTATGCTAACCCATTACTTTTAAGCGAAAGTGGCGATCAAAACATTTTAGAATCCAAAATTATGCGCTTTTT
TGGAATTGGAGAGTCACAATTAGCTGCTGATTTAAATGATTTGATTGTCACGCAAGTCAACCCGACGATTGCGACATATG
CTGGTGATAATGAAGTTGTGGTCCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGACTTGTGAAGGAAACC
GAGGAAGAAATATTGCGCCGAGAAGGTACCTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAACGAACTTACCATCTCTGCCGCAGAAAGTTTCACTGCTGGTTTGTTCCAAGCAGAAATTGCCCGCTTTC
CTGGCATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGTCCAGATAGTTTAGAAGGTCATCCTGCTGGCACTATTTGGATTGGAC
TAAGCGTTAAAGGTTATGAAACAGAGGCTTTTCAGTTTGTCTATGGAAGAGATCGAAACCATAATCGCCGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATTTTTAGACGCAAATTAG
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACAGAACTATTACTAGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACGGTAGTTGGAGATAACCCAACACGTTTAAAAGAAGTAA
TCGAAATCGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACAAAACAA
ATCTTGGCTGCTCATCTACAAAAGCAATTAGTGGAAGATGAATACCATATGAATAAAATTAATGAGTATTTCACTTCTAG
GAATAGGACTATGACCGAAAATAATAAATTACAAGCGGTTATTATTGAAGATTCCATCGTATTAAATAATGATTTTGGCT
TTGCGGCTGGAATGTACTTAAGAGAAAACAATCATACTTACGTTTTGCTACCAGGTCCACCATCTGAAATGAAACCAATG
TTTACAAGCTATGCTAACCCATTACTTTTAAGCGAAAGTGGCGATCAAAACATTTTAGAATCCAAAATTATGCGCTTTTT
TGGAATTGGAGAGTCACAATTAGCTGCTGATTTAAATGATTTGATTGTCACGCAAGTCAACCCGACGATTGCGACATATG
CTGGTGATAATGAAGTTGTGGTCCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGACTTGTGAAGGAAACC
GAGGAAGAAATATTGCGCCGAGAAGGTACCTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAACGAACTTACCATCTCTGCCGCAGAAAGTTTCACTGCTGGTTTGTTCCAAGCAGAAATTGCCCGCTTTC
CTGGCATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGTCCAGATAGTTTAGAAGGTCATCCTGCTGGCACTATTTGGATTGGAC
TAAGCGTTAAAGGTTATGAAACAGAGGCTTTTCAGTTTGTCTATGGAAGAGATCGAAACCATAATCGCCGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATTTTTAGACGCAAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| cinA | Bacillus subtilis subsp. subtilis str. 168 |
51.345 |
98.792 |
0.507 |
| cinA | Streptococcus pneumoniae TIGR4 |
49.282 |
100 |
0.498 |
| cinA | Streptococcus mitis SK321 |
49.043 |
100 |
0.495 |
| cinA | Streptococcus mitis NCTC 12261 |
48.804 |
100 |
0.493 |
| cinA | Streptococcus pneumoniae Rx1 |
48.565 |
100 |
0.49 |
| cinA | Streptococcus pneumoniae R6 |
48.565 |
100 |
0.49 |
| cinA | Streptococcus pneumoniae D39 |
48.325 |
100 |
0.488 |
| cinA | Streptococcus mutans UA159 |
48.058 |
99.517 |
0.478 |
| cinA | Streptococcus suis isolate S10 |
38.35 |
99.517 |
0.382 |