Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JK628_RS01780 Genome accession   NZ_CP068437
Coordinates   393651..394922 (-) Length   423 a.a.
NCBI ID   WP_202287576.1    Uniprot ID   -
Organism   Shewanella sp. KX20019     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388651..399922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JK628_RS01755 (JK628_01755) mutT 390036..390431 (-) 396 WP_202287571.1 8-oxo-dGTP diphosphatase MutT -
  JK628_RS01760 (JK628_01760) yacG 390428..390667 (-) 240 WP_202287572.1 DNA gyrase inhibitor YacG -
  JK628_RS01765 (JK628_01765) zapD 390716..391450 (-) 735 WP_202287573.1 cell division protein ZapD -
  JK628_RS01770 (JK628_01770) coaE 391459..392064 (-) 606 WP_202287574.1 dephospho-CoA kinase -
  JK628_RS01775 (JK628_01775) - 392662..393573 (-) 912 WP_202287575.1 A24 family peptidase -
  JK628_RS01780 (JK628_01780) pilC 393651..394922 (-) 1272 WP_202287576.1 type II secretion system F family protein Machinery gene
  JK628_RS01785 (JK628_01785) pilB 395003..396712 (-) 1710 WP_202287577.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JK628_RS01790 (JK628_01790) - 397107..398465 (+) 1359 WP_202287578.1 O-antigen ligase family protein -
  JK628_RS23410 (JK628_01795) - 398909..399271 (-) 363 WP_272931654.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46187.39 Da        Isoelectric Point: 10.2911

>NTDB_id=529056 JK628_RS01780 WP_202287576.1 393651..394922(-) (pilC) [Shewanella sp. KX20019]
MATATRLSKQARDRKKNQKSQPKVVTYSWAGVSRDGRRTSGELRGVSSAEIRAQLKAQGVIPKSVRKKSAPLFSSEKKIK
PMDIAMVTRQIATMLAAGVPIVTTLELLGKGHEKPKMRELLSTIVNDVQSGIPLSDSLRPHRLYFDDLYVDLVAAGEHSG
SLDAVFDRIATYREKSEALKSKIKKAMFYPASVVIVAIIVTALLLLFVVPQFETIFQGFGAELPAFTQVVVNLSRWLQAS
WYLFVIAIIAALWGFRRVHRNSQLFRDKIDALVLKIPIVGEILHKGAMAKFARTLATTFAAGVPLIDGLESAAGASGNAV
YKKAVLDIRTEVMSGMQMNVAMRTTGLFPDMMIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQLGNVVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=529056 JK628_RS01780 WP_202287576.1 393651..394922(-) (pilC) [Shewanella sp. KX20019]
ATGGCGACTGCAACCAGACTGTCAAAACAAGCTCGAGATAGAAAGAAAAACCAAAAAAGCCAACCTAAAGTAGTCACTTA
CTCCTGGGCAGGGGTTAGCCGTGATGGCCGCCGCACCAGTGGTGAGCTGCGCGGCGTCTCTAGCGCTGAAATTCGCGCCC
AACTGAAAGCTCAGGGCGTTATCCCCAAATCGGTGCGGAAAAAATCGGCGCCGCTGTTCAGTTCAGAGAAGAAAATCAAA
CCCATGGATATCGCCATGGTTACCCGCCAAATAGCCACAATGCTTGCAGCCGGTGTGCCAATTGTGACCACCCTTGAACT
GCTCGGTAAAGGCCATGAAAAGCCCAAGATGCGCGAACTGTTATCCACTATTGTCAATGATGTGCAATCGGGCATTCCAC
TGTCTGATTCACTGCGGCCACACCGACTCTATTTTGATGATCTGTATGTCGATCTGGTCGCCGCCGGCGAACACTCTGGT
TCACTGGACGCGGTATTTGACCGCATCGCCACTTATCGCGAGAAGTCTGAAGCGTTAAAGTCAAAAATAAAGAAGGCGAT
GTTCTACCCTGCCTCAGTGGTTATAGTGGCGATAATTGTCACCGCACTGCTACTACTGTTTGTGGTACCACAGTTTGAAA
CGATATTTCAAGGTTTTGGTGCAGAACTGCCGGCTTTCACTCAAGTAGTGGTTAATTTGTCCCGTTGGCTGCAAGCCTCC
TGGTACCTGTTTGTGATTGCCATTATTGCTGCGCTATGGGGCTTTAGGCGTGTTCACCGTAACTCACAACTATTTCGCGA
CAAAATTGATGCTTTAGTATTAAAAATACCTATCGTCGGAGAGATATTACATAAGGGCGCCATGGCCAAGTTTGCCCGCA
CTCTTGCTACAACCTTCGCTGCTGGCGTACCGTTAATCGATGGTTTGGAATCTGCAGCAGGCGCCTCCGGTAATGCGGTA
TACAAAAAGGCGGTGCTCGATATTCGTACCGAGGTGATGTCCGGCATGCAGATGAACGTGGCGATGCGCACCACTGGGCT
GTTCCCCGACATGATGATCCAGATGGTGATGATTGGTGAGGAGTCTGGCTCACTTGATAATATGCTCAACAAGGTGGCCA
ATATCTACGAGATGCAGGTCGATGATGCCGTCGATGGCTTATCAAGCCTGATTGAACCGATTATGATGGTGGTGATTGGT
ACTGTGGTTGGTGGCTTAATTGTTGCCATGTACCTGCCGATATTCCAGCTCGGTAATGTTGTCGGTGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.203

93.381

0.525
  pilC Acinetobacter baylyi ADP1

51.637

93.853

0.485
  pilC Acinetobacter baumannii D1279779

50.251

94.09

0.473
  pilC Legionella pneumophila strain ERS1305867

48.762

95.508

0.466
  pilC Vibrio cholerae strain A1552

49.497

94.09

0.466
  pilC Vibrio campbellii strain DS40M4

45.906

95.272

0.437
  pilG Neisseria gonorrhoeae MS11

44.503

90.307

0.402
  pilG Neisseria meningitidis 44/76-A

44.241

90.307

0.4