Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JKK33_RS02235 Genome accession   NZ_CP068227
Coordinates   472051..473316 (-) Length   421 a.a.
NCBI ID   WP_025012055.1    Uniprot ID   -
Organism   Shewanella algae strain A59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467051..478316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKK33_RS02205 (JKK33_02205) - 468720..468986 (-) 267 Protein_408 transposase -
  JKK33_RS02210 (JKK33_02210) mutT 469064..469462 (-) 399 WP_025012058.1 8-oxo-dGTP diphosphatase MutT -
  JKK33_RS02215 (JKK33_02215) yacG 469462..469674 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  JKK33_RS02220 (JKK33_02220) zapD 469719..470459 (-) 741 WP_028779562.1 cell division protein ZapD -
  JKK33_RS02225 (JKK33_02225) coaE 470456..471067 (-) 612 WP_025012056.1 dephospho-CoA kinase -
  JKK33_RS02230 (JKK33_02230) pilD 471068..471982 (-) 915 WP_144128769.1 prepilin peptidase Machinery gene
  JKK33_RS02235 (JKK33_02235) pilC 472051..473316 (-) 1266 WP_025012055.1 type II secretion system F family protein Machinery gene
  JKK33_RS02240 (JKK33_02240) pilB 473469..475175 (-) 1707 WP_025012054.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JKK33_RS02245 (JKK33_02245) - 475185..475598 (-) 414 WP_025012053.1 pilin -
  JKK33_RS02250 (JKK33_02250) nadC 476466..477326 (-) 861 WP_025012052.1 carboxylating nicotinate-nucleotide diphosphorylase -
  JKK33_RS02255 (JKK33_02255) ampD 477485..478063 (+) 579 WP_208125426.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45665.76 Da        Isoelectric Point: 10.3084

>NTDB_id=528237 JKK33_RS02235 WP_025012055.1 472051..473316(-) (pilC) [Shewanella algae strain A59]
MATATATAKNNKAKNKGAKAQPKIHTFTWKGNNRDGKLSSGELRGTSITEVKTLLKSQGINPKTVRKKSASMFGDKKIKP
MDIAVITRQIATMLAAGVPLVTTIELIARGHEKNKVRVLLGTVLADIQAGIPLSDALRPHRAYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKSEALKSKIKKAMFYPAAVVVVAIAVTVLLLVAVVPQFEEIFKGFGAELPAFTQLIVNISRGLQSTW
YLFLAGIVISAWLFVRAHRNSENFRNRIDEMVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
IVGGLIVGMYLPIFNLGKVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=528237 JKK33_RS02235 WP_025012055.1 472051..473316(-) (pilC) [Shewanella algae strain A59]
ATGGCAACCGCAACGGCGACAGCAAAAAACAATAAAGCCAAGAATAAAGGCGCCAAAGCCCAACCCAAGATCCACACCTT
TACCTGGAAGGGGAATAATCGCGACGGCAAACTCAGCTCCGGCGAACTGCGTGGCACCAGCATCACCGAAGTAAAAACCC
TTCTTAAAAGCCAGGGGATTAATCCCAAGACGGTACGTAAAAAATCAGCGTCTATGTTTGGCGATAAAAAGATCAAGCCG
ATGGATATCGCGGTGATCACCCGCCAGATAGCTACTATGCTGGCTGCCGGGGTTCCCTTGGTAACAACTATTGAATTGAT
CGCCCGCGGCCATGAAAAAAACAAGGTGCGGGTACTACTCGGCACTGTATTGGCCGATATCCAAGCCGGCATCCCGCTGT
CCGATGCTCTTCGCCCCCATAGAGCATACTTCGATGATCTCTACGTCGACTTAGTGGCCGCCGGTGAACATTCAGGTTCC
TTGGATGCTGTATTCGACCGTATCGCCACCTACAGGGAAAAGTCAGAGGCCCTTAAGTCGAAAATTAAGAAAGCCATGTT
TTACCCTGCTGCAGTGGTGGTAGTTGCCATAGCCGTTACCGTGCTGCTGCTTGTTGCCGTTGTACCTCAATTTGAAGAAA
TATTTAAAGGCTTCGGCGCCGAACTGCCTGCCTTTACCCAATTAATTGTCAATATCAGCCGCGGCCTTCAGAGTACCTGG
TATCTATTTCTGGCTGGTATCGTTATCAGTGCCTGGCTCTTTGTCCGTGCTCATCGAAATTCAGAAAATTTCCGTAACCG
TATCGACGAAATGGTGCTTAAGATCCCCGCGATAGGAGATATCTTACATAAAGGTGCCATGGCCCGTTTTGCCCGCACTC
TGGCCACCACTTTTGCTGCCGGGGTGCCGCTGATTGATGGCCTGGAGTCTGCCGCCGGCGCCTCCGGTAATTATGTTTAC
CGCAAGGCGCTATTAAATGTGCGTACCGAAGTGATGGCCGGGATGCAGATGAACGTGGCCATGCGCACTACCAAGCTATT
CCCCGATATGCTAATCCAGATGGTGATGATAGGTGAAGAATCCGGCTCATTGGACAACATGCTCAACAAAGTCGCCAATA
TCTATGAGATGCAGGTAGACGATGCCGTAGACGGACTCTCCAGCTTGATAGAACCTATTATGATGGTAGTTATCGGCACC
ATAGTCGGCGGGCTTATCGTCGGCATGTATCTACCTATCTTCAACTTGGGTAAAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.388

94.774

0.525
  pilC Acinetobacter baylyi ADP1

49.633

97.15

0.482
  pilC Legionella pneumophila strain ERS1305867

48.762

95.962

0.468
  pilC Acinetobacter baumannii D1279779

47.304

96.912

0.458
  pilC Vibrio cholerae strain A1552

47.264

95.487

0.451
  pilC Vibrio campbellii strain DS40M4

45.161

95.724

0.432
  pilG Neisseria meningitidis 44/76-A

42.029

98.337

0.413
  pilG Neisseria gonorrhoeae MS11

42.029

98.337

0.413