Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JKK33_RS02230 Genome accession   NZ_CP068227
Coordinates   471068..471982 (-) Length   304 a.a.
NCBI ID   WP_144128769.1    Uniprot ID   -
Organism   Shewanella algae strain A59     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 466068..476982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKK33_RS02205 (JKK33_02205) - 468720..468986 (-) 267 Protein_408 transposase -
  JKK33_RS02210 (JKK33_02210) mutT 469064..469462 (-) 399 WP_025012058.1 8-oxo-dGTP diphosphatase MutT -
  JKK33_RS02215 (JKK33_02215) yacG 469462..469674 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  JKK33_RS02220 (JKK33_02220) zapD 469719..470459 (-) 741 WP_028779562.1 cell division protein ZapD -
  JKK33_RS02225 (JKK33_02225) coaE 470456..471067 (-) 612 WP_025012056.1 dephospho-CoA kinase -
  JKK33_RS02230 (JKK33_02230) pilD 471068..471982 (-) 915 WP_144128769.1 prepilin peptidase Machinery gene
  JKK33_RS02235 (JKK33_02235) pilC 472051..473316 (-) 1266 WP_025012055.1 type II secretion system F family protein Machinery gene
  JKK33_RS02240 (JKK33_02240) pilB 473469..475175 (-) 1707 WP_025012054.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JKK33_RS02245 (JKK33_02245) - 475185..475598 (-) 414 WP_025012053.1 pilin -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 33839.21 Da        Isoelectric Point: 7.2147

>NTDB_id=528236 JKK33_RS02230 WP_144128769.1 471068..471982(-) (pilD) [Shewanella algae strain A59]
MSEFIAVLSHNQWLFLVLCFLFASVIGSFLNVVIHRLPVMMKREWQQECNQYLQEYQPEFAKQLGEAKLNAPIDNYPAKY
NLLLPKSACPKCGAHIKPWHNLPIIGYLLLGGKCASCNTAISARYPIFELLTALLISTLGWYFGPTLQFVYATILTFGLI
ALSGIDLDEMLLPDQITLPLLWLGLLVNISGTFTNLTDATIGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGALVGVLLILFKNLNRGNPIPFGPYIAIAGWVALVWGQQIVDWYLGTL

Nucleotide


Download         Length: 915 bp        

>NTDB_id=528236 JKK33_RS02230 WP_144128769.1 471068..471982(-) (pilD) [Shewanella algae strain A59]
ATGTCAGAATTTATTGCCGTATTGAGCCACAACCAGTGGCTCTTTCTTGTTCTCTGTTTTTTGTTTGCCTCTGTAATAGG
CAGCTTTCTCAATGTGGTAATCCATCGCCTGCCGGTAATGATGAAGCGCGAATGGCAGCAGGAATGCAACCAATACCTGC
AGGAATATCAACCCGAATTCGCCAAACAGCTGGGTGAAGCCAAGCTTAATGCACCAATAGATAACTATCCGGCCAAATAC
AATCTGTTACTGCCGAAATCTGCCTGCCCCAAGTGTGGCGCCCATATCAAACCCTGGCACAACCTCCCCATAATCGGCTA
TTTGTTGCTTGGCGGTAAATGCGCCTCCTGCAACACAGCTATTTCAGCGAGATACCCGATATTTGAGCTGCTGACCGCCC
TGCTTATCAGTACTCTCGGTTGGTATTTTGGCCCGACACTGCAGTTTGTTTACGCCACTATTCTCACCTTTGGATTGATA
GCCCTCAGCGGGATAGATCTGGATGAAATGCTGCTGCCGGATCAGATTACCCTGCCGCTACTGTGGCTTGGTTTACTGGT
TAATATCTCGGGCACCTTTACTAATCTGACCGATGCCACCATAGGGGCCGCTGCCGGCTATTTAAGCCTCTGGTCGGTCT
ACTGGCTATTTAAACTGCTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGATGGCATTGTTTGGTGCCTGG
CTTGGCTGGCAGATGTTACCTCTAATTATTCTGCTCTCTTCTCTGGTCGGTGCCCTAGTAGGCGTTTTACTTATTCTGTT
CAAGAACCTTAATCGGGGTAACCCTATCCCCTTTGGCCCTTATATTGCTATCGCTGGTTGGGTCGCTTTGGTGTGGGGAC
AACAGATTGTCGACTGGTATTTGGGAACACTCTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(154-262)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

49.169

99.013

0.487
  pilD Vibrio cholerae strain A1552

50

96.053

0.48
  pilD Acinetobacter nosocomialis M2

48.013

99.342

0.477
  pilD Acinetobacter baumannii D1279779

47.682

99.342

0.474
  pilD Neisseria gonorrhoeae MS11

45.196

92.434

0.418