Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BAJP3144_RS08140 Genome accession   NZ_CP082283
Coordinates   1624615..1625514 (+) Length   299 a.a.
NCBI ID   WP_015388238.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3144     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1619615..1630514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3144_RS08120 (BAJP3144_08120) - 1620306..1622009 (+) 1704 WP_160182661.1 glycosyl transferase -
  BAJP3144_RS08125 (BAJP3144_08125) - 1622006..1622287 (+) 282 WP_014417762.1 FlhB-like flagellar biosynthesis protein -
  BAJP3144_RS08130 (BAJP3144_08130) sucC 1622462..1623619 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  BAJP3144_RS08135 (BAJP3144_08135) sucD 1623648..1624550 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  BAJP3144_RS08140 (BAJP3144_08140) dprA 1624615..1625514 (+) 900 WP_015388238.1 DNA-processing protein DprA Machinery gene
  BAJP3144_RS08145 (BAJP3144_08145) topA 1625696..1627771 (+) 2076 WP_014417765.1 type I DNA topoisomerase -
  BAJP3144_RS08150 (BAJP3144_08150) trmFO 1627836..1629143 (+) 1308 WP_061862190.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BAJP3144_RS08155 (BAJP3144_08155) xerC 1629213..1630130 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32820.92 Da        Isoelectric Point: 7.8285

>NTDB_id=528022 BAJP3144_RS08140 WP_015388238.1 1624615..1625514(+) (dprA) [Bacillus amyloliquefaciens strain JP3144]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=528022 BAJP3144_RS08140 WP_015388238.1 1624615..1625514(+) (dprA) [Bacillus amyloliquefaciens strain JP3144]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCATATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365