Detailed information NTG0527609

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: BAJP3042_RS13000
• Genome accession: NZ_CP082243
• Coordinates: 2692041..2693309 (+)
• Length: 422 a.a.
• NCBI ID: WP_015240288.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP3042
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2687041..2698309

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAJP3042_RS12980 (BAJP3042_12980)	-	2688412..2689032 (-)	621	WP_088461189.1	lipopolysaccharide assembly protein LapB	-
BAJP3042_RS12985 (BAJP3042_12985)	mnmA	2689120..2690235 (-)	1116	WP_053573163.1	tRNA 2-thiouridine(34) synthase MnmA	-
BAJP3042_RS12990 (BAJP3042_12990)	-	2690272..2691411 (-)	1140	WP_007612815.1	cysteine desulfurase family protein	-
BAJP3042_RS12995 (BAJP3042_12995)	cymR	2691430..2691846 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
BAJP3042_RS13000 (BAJP3042_13000)	rarA	2692041..2693309 (+)	1269	WP_015240288.1	replication-associated recombination protein A	Machinery gene
BAJP3042_RS13005 (BAJP3042_13005)	-	2693425..2694189 (-)	765	WP_017418227.1	ThiF family adenylyltransferase	-
BAJP3042_RS13015 (BAJP3042_13015)	aspS	2694514..2696292 (-)	1779	WP_007408199.1	aspartate--tRNA ligase	-
BAJP3042_RS13020 (BAJP3042_13020)	hisS	2696307..2697581 (-)	1275	WP_222835210.1	histidine--tRNA ligase	-
BAJP3042_RS13025 (BAJP3042_13025)	-	2697938..2698108 (-)	171	WP_003152722.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46661.51 Da
• Isoelectric Point: 7.9149

>NTDB_id=527609 BAJP3042_RS13000 WP_015240288.1 2692041..2693309(+) (rarA) [Bacillus amyloliquefaciens strain JP3042]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=527609 BAJP3042_RS13000 WP_015240288.1 2692041..2693309(+) (rarA) [Bacillus amyloliquefaciens strain JP3042]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGGCCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATCTTCGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGGAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCGCAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCTACAAAGGAATCAAGCGACGGCACGA
TCCGGATTACACGGGAGACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGCGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCTCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCTGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACTGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	91.211	99.763	0.91