Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   I6I78_RS01990 Genome accession   NZ_CP068128
Coordinates   403906..405144 (+) Length   412 a.a.
NCBI ID   WP_201705552.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_1121     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 398906..410144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I78_RS01970 (I6I78_01970) yfmF 399138..400406 (+) 1269 WP_081117606.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  I6I78_RS01975 (I6I78_01975) yfmH 400399..401697 (+) 1299 WP_074934338.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  I6I78_RS01980 (I6I78_01980) - 402162..403064 (+) 903 WP_016608952.1 helix-turn-helix domain-containing protein -
  I6I78_RS01985 (I6I78_01985) pgsA 403197..403778 (+) 582 WP_005226440.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6I78_RS01990 (I6I78_01990) cinA 403906..405144 (+) 1239 WP_201705552.1 competence/damage-inducible protein A Machinery gene
  I6I78_RS01995 (I6I78_01995) recA 405247..406290 (+) 1044 WP_005226448.1 recombinase RecA Machinery gene
  I6I78_RS02000 (I6I78_02000) rny 406533..408107 (+) 1575 WP_005232891.1 ribonuclease Y -
  I6I78_RS02005 (I6I78_02005) treR 408405..409121 (-) 717 WP_005226457.1 trehalose operon repressor -
  I6I78_RS02010 (I6I78_02010) pgmB 409176..409826 (-) 651 WP_005232889.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44753.88 Da        Isoelectric Point: 4.6005

>NTDB_id=527309 I6I78_RS01990 WP_201705552.1 403906..405144(+) (cinA) [Enterococcus casseliflavus strain FDAARGOS_1121]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIDVFYHSVVGDNPNRLEELLTIADKRSDLIVLCGGLGPTDDDLTKQV
TARHVGQELVRDEPGYHQLKAFFENSPRRMTENNLRQTLVFKDGVSLPNPNGLAIGIFYQTAATSYLLLPGPPSELQAMF
LTHAKPLLLEQFPQEEVLLSRVLRYYGIGESALVTELADLIENQVNPTIAPYAKPNEVTLRLTVKTADEAQGIKQLDALE
ETVQARVGAYFYGYGEQNSLAETVVELLIEKKKTVTAAESLTAGLFQATLGGIPGVSEVFPGGFVTYSAGTKSKLLGIDP
ALLESYGTVSQECAEAMAVYARKQAETDYAVAFTGVAGPDELEGQPKGTVWIALASDKGVSSQLYHFNRDRAYIRHSAVM
AGLNQIRKELLN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=527309 I6I78_RS01990 WP_201705552.1 403906..405144(+) (cinA) [Enterococcus casseliflavus strain FDAARGOS_1121]
ATGAAAGCAGAGATTATTGCAGTCGGGACCGAATTACTTTTAGGACAGGTGGTGAATACGAACGCAACCTTCTTGTCAGA
AGAACTGGCAAGTCTTGGGATCGATGTTTTTTATCATAGTGTTGTCGGGGACAACCCCAATCGCTTAGAAGAATTGCTGA
CGATCGCCGACAAACGCAGCGACTTGATCGTATTGTGCGGCGGCTTAGGGCCCACCGACGATGACTTGACGAAACAAGTC
ACTGCCCGTCATGTGGGACAAGAGTTAGTCAGAGATGAACCAGGCTATCACCAATTGAAAGCCTTCTTTGAAAACAGTCC
ACGGAGGATGACGGAAAACAATTTGCGGCAGACCCTCGTTTTTAAGGACGGTGTGTCTTTGCCAAATCCCAATGGACTAG
CGATCGGGATCTTTTATCAGACAGCCGCTACCAGTTATTTGCTGCTGCCAGGACCACCAAGTGAACTACAGGCGATGTTT
CTTACCCACGCAAAACCACTTCTGTTAGAGCAGTTTCCCCAAGAAGAGGTCTTGCTGTCTCGCGTTTTGCGCTATTACGG
GATCGGGGAATCGGCATTGGTCACAGAATTGGCCGATTTGATCGAGAATCAAGTCAATCCCACCATCGCTCCTTATGCCA
AACCCAATGAGGTCACGCTGCGTCTGACGGTCAAAACTGCAGACGAGGCGCAAGGGATCAAACAATTGGATGCGTTAGAA
GAAACCGTCCAAGCACGGGTCGGTGCGTATTTCTATGGGTATGGGGAACAAAATTCGCTGGCAGAAACAGTCGTCGAGCT
ACTGATCGAGAAAAAGAAAACCGTCACCGCAGCGGAAAGTTTGACCGCTGGTTTGTTCCAAGCGACCCTAGGAGGGATTC
CTGGCGTCTCTGAGGTGTTTCCCGGTGGGTTCGTGACATATTCTGCTGGAACAAAAAGCAAGCTCTTAGGCATCGATCCA
GCGCTTTTAGAAAGCTATGGGACTGTTAGTCAGGAATGTGCGGAAGCAATGGCCGTCTATGCCCGCAAACAAGCAGAGAC
CGATTATGCGGTGGCGTTTACTGGTGTTGCTGGTCCAGACGAACTAGAAGGCCAGCCCAAAGGCACTGTTTGGATCGCCT
TAGCTTCTGACAAAGGCGTCTCGAGTCAGCTGTATCACTTCAACCGCGACCGCGCCTATATTCGGCATAGTGCTGTCATG
GCAGGCTTAAATCAAATACGTAAGGAATTATTAAATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.827

100

0.522
  cinA Streptococcus mitis SK321

50.591

100

0.519
  cinA Streptococcus pneumoniae D39

50.591

100

0.519
  cinA Streptococcus pneumoniae Rx1

50.591

100

0.519
  cinA Streptococcus pneumoniae R6

50.591

100

0.519
  cinA Streptococcus mitis NCTC 12261

50.118

100

0.515
  cinA Streptococcus mutans UA159

50.24

100

0.507
  cinA Bacillus subtilis subsp. subtilis str. 168

44.988

99.272

0.447
  cinA Streptococcus suis isolate S10

42.754

100

0.43