Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   K6974_RS04085 Genome accession   NZ_CP082204
Coordinates   782381..783043 (+) Length   220 a.a.
NCBI ID   WP_222336860.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 777381..788043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS04065 (K6974_04035) - 777781..778710 (-) 930 WP_222336864.1 ABC transporter substrate-binding protein -
  K6974_RS04070 (K6974_04040) - 778723..779508 (-) 786 WP_222336863.1 ABC transporter ATP-binding protein -
  K6974_RS04075 (K6974_04045) - 779974..781419 (-) 1446 WP_222336862.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  K6974_RS04080 (K6974_04050) - 781566..782312 (+) 747 WP_222336861.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  K6974_RS04085 (K6974_04055) comEA/celA/cilE 782381..783043 (+) 663 WP_222336860.1 helix-hairpin-helix domain-containing protein Machinery gene
  K6974_RS04090 (K6974_04060) comEC/celB 783027..785264 (+) 2238 WP_222336859.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23527.20 Da        Isoelectric Point: 4.0963

>NTDB_id=527239 K6974_RS04085 WP_222336860.1 782381..783043(+) (comEA/celA/cilE) [Streptococcus suis strain FJSM5]
MDTIKTYIEMLKEYKWQIALPAVTGLLMATFLIFSQSAKSDQTGLTDFPQTEQTSSSQEQTEETSTEVSKEPSLLVVDVK
GAVVKPGLYTLEADARVNDAVEAAGGLTSQADPKSINLAQKLSDEAVVYVASKDEDISVVASTTTSSAMSQEEKNTNLVN
LNTATEADLQTISGIGAKRAADIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=527239 K6974_RS04085 WP_222336860.1 782381..783043(+) (comEA/celA/cilE) [Streptococcus suis strain FJSM5]
ATGGATACGATTAAAACTTATATAGAAATGCTTAAAGAATACAAGTGGCAAATTGCTCTGCCAGCAGTGACTGGCTTGCT
AATGGCGACATTCTTAATATTCAGTCAATCAGCCAAGTCTGATCAGACAGGCCTGACAGATTTTCCACAGACCGAACAAA
CTTCTAGCAGTCAGGAGCAGACGGAGGAAACCAGTACAGAAGTAAGTAAGGAGCCCAGCTTGCTGGTCGTTGATGTCAAA
GGAGCAGTAGTAAAACCAGGACTCTACACTTTAGAAGCTGATGCGCGTGTCAATGATGCAGTTGAAGCAGCTGGTGGCTT
GACCAGTCAGGCAGACCCCAAGTCTATCAATCTGGCTCAGAAGCTCAGCGACGAAGCGGTGGTCTATGTGGCAAGCAAGG
ATGAAGATATCTCGGTGGTGGCCAGCACGACTACCAGCTCTGCTATGTCCCAAGAAGAAAAAAACACTAATCTAGTTAAT
CTCAACACGGCGACCGAGGCGGACCTGCAGACCATTTCAGGTATCGGTGCCAAGCGGGCGGCGGACATTATCGCCTATCG
TGAGGCCAACGGCGGCTTCAAGTCGGTGGATGACCTCAACAATGTTTCGGGCATCGGCGACAAGACCATGGAAAGCATTC
GACCTTATGTCACGGTCGATTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(76-130)

Helix-hairpin-helix motif (HHH_3)

(155-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.511

100

0.477
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.059

100

0.473
  comEA/celA/cilE Streptococcus pneumoniae D39

47.059

100

0.473
  comEA/celA/cilE Streptococcus pneumoniae R6

47.059

100

0.473
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

47.465

98.636

0.468
  comEA/celA/cilE Streptococcus mitis SK321

45.455

100

0.455
  comEA Streptococcus thermophilus LMD-9

60.131

69.545

0.418
  comEA Lactococcus lactis subsp. cremoris KW2

41.014

98.636

0.405
  comEA Bacillus subtilis subsp. subtilis str. 168

40

95.455

0.382