Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   I6J15_RS01530 Genome accession   NZ_CP068056
Coordinates   303906..304838 (-) Length   310 a.a.
NCBI ID   WP_061409237.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain FDAARGOS_1158     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 302787..303740 303906..304838 flank 166


Gene organization within MGE regions


Location: 302787..304838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J15_RS01525 (I6J15_01525) - 302787..303740 (+) 954 WP_111712625.1 IS30 family transposase -
  I6J15_RS01530 (I6J15_01530) amiF 303906..304838 (-) 933 WP_061409237.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 34995.83 Da        Isoelectric Point: 6.0651

>NTDB_id=526656 I6J15_RS01530 WP_061409237.1 303906..304838(-) (amiF) [Streptococcus lutetiensis strain FDAARGOS_1158]
MTENRKKLVELKNVSLTFNEGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISGGEIDFNGETVSNL
KGKKLHEFRKNVQMIFQDPQASLNARMKIRDIVAEGLDIHKLVNSKEERDEKVQELLSLVGLNKDHMTRYPHEFSGGQRQ
RIGIARALAVQPKFIIADEPISALDVSIQAQVVNLMQKLQREKGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTKSLLSAIPEPDPESERERVHQAYDPSAELDGQEREMREITPGHFVLSTEAEAEEYKKALS

Nucleotide


Download         Length: 933 bp        

>NTDB_id=526656 I6J15_RS01530 WP_061409237.1 303906..304838(-) (amiF) [Streptococcus lutetiensis strain FDAARGOS_1158]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTCTCTTTGACTTTCAACGAAGGCAAAAAGAATGAAGTAAA
AGCTATCAACAACGTCAGCTTCGATATCTATGAAGGTGAAGTCTTTGGTCTAGTTGGTGAATCAGGTTCTGGTAAAACAA
CTGTTGGACGTGCTATTTTAAAACTTTACGATATTAGTGGTGGTGAAATCGACTTTAACGGAGAAACGGTTTCTAACCTT
AAAGGTAAAAAACTACATGAATTCCGTAAAAATGTCCAAATGATTTTCCAAGATCCACAAGCCAGTCTTAATGCACGTAT
GAAAATCCGTGATATCGTTGCTGAAGGTCTTGATATTCACAAACTTGTTAATAGTAAAGAAGAACGTGATGAAAAAGTTC
AAGAATTGCTTTCTCTAGTAGGTTTGAACAAAGATCACATGACTCGTTACCCACACGAATTTTCTGGTGGTCAACGTCAA
CGTATTGGTATTGCACGTGCTCTTGCTGTACAACCAAAATTCATTATTGCTGATGAACCAATTTCTGCGCTTGACGTGTC
TATTCAAGCTCAAGTTGTTAATTTGATGCAAAAACTTCAACGCGAAAAAGGCTTAACTTACCTCTTCATCGCTCACGATT
TGTCAATGGTTAAATACATTTCAGATCGTATTGGAGTTATGCACTGGGGTAAAATGCTTGAAATTGGAACATCTGAAGAT
GTTTACAACAATCCAATTCATCCATATACTAAAAGTCTGTTGTCTGCAATTCCAGAACCAGATCCAGAATCTGAACGTGA
ACGTGTACACCAAGCTTATGATCCGAGTGCAGAACTTGATGGTCAAGAACGTGAAATGCGTGAAATCACACCAGGACATT
TTGTACTTTCTACAGAAGCAGAAGCAGAAGAATACAAAAAAGCATTATCATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-267)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

55.7

99.032

0.552
  amiF Streptococcus thermophilus LMG 18311

55.375

99.032

0.548
  amiF Streptococcus salivarius strain HSISS4

55.049

99.032

0.545