Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JJL50_RS16980 Genome accession   NZ_CP067993
Coordinates   3653450..3654709 (+) Length   419 a.a.
NCBI ID   WP_107432143.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain DHHJ     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3648450..3659709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJL50_RS16965 (JJL50_16965) pilB 3649040..3650767 (-) 1728 WP_182266599.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JJL50_RS16970 (JJL50_16970) - 3651397..3652629 (-) 1233 WP_201117184.1 isoprenylcysteine carboxylmethyltransferase family protein -
  JJL50_RS16975 (JJL50_16975) - 3652636..3653088 (-) 453 WP_201117186.1 pilin -
  JJL50_RS16980 (JJL50_16980) pilC 3653450..3654709 (+) 1260 WP_107432143.1 type II secretion system F family protein Machinery gene
  JJL50_RS16985 (JJL50_16985) - 3654718..3655581 (+) 864 WP_032128827.1 A24 family peptidase -
  JJL50_RS16990 (JJL50_16990) coaE 3655593..3656204 (+) 612 WP_201117188.1 dephospho-CoA kinase -
  JJL50_RS16995 (JJL50_16995) - 3656378..3657745 (-) 1368 WP_032128829.1 HAMP domain-containing sensor histidine kinase -
  JJL50_RS17000 (JJL50_17000) - 3657708..3658385 (-) 678 WP_005410804.1 response regulator transcription factor -
  JJL50_RS17005 (JJL50_17005) - 3658394..3658867 (-) 474 WP_049401611.1 hypothetical protein -
  JJL50_RS17010 (JJL50_17010) - 3658957..3659433 (-) 477 WP_010481495.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45771.18 Da        Isoelectric Point: 10.2043

>NTDB_id=526206 JJL50_RS16980 WP_107432143.1 3653450..3654709(+) (pilC) [Stenotrophomonas maltophilia strain DHHJ]
MSVSRSAIKKEPVARSTMELQPFVWEGTDKRGIKMKGEQLAKNANLLRAELRKQGINPGQVKPKPKPLFGAAGKPVGAKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDGIRADIEGGSSLNEAISRHPVQFDELYRNLVRAGESAGVLE
TVLDTIASYKENIEALKGKIKKALFYPAMVLVVAFLVSTILLVWVVPQFEEVFKSFGADLPAFTQMVVNLSRFMVSWWWL
IAIVVIGAVVAIAMTYRRSEKMQHTVDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYGE
AVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGLVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=526206 JJL50_RS16980 WP_107432143.1 3653450..3654709(+) (pilC) [Stenotrophomonas maltophilia strain DHHJ]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCCGTGGCGCGTAGCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGGATCAAGATGAAGGGCGAGCAGTTGGCGAAGAACGCCAATCTGCTGCGCGCCGAACTTCGCAAGC
AGGGGATCAATCCCGGCCAGGTCAAGCCGAAGCCGAAGCCACTGTTCGGCGCGGCCGGCAAGCCCGTGGGCGCTAAGGAC
ATTGCGTTCTTCAGCCGGCAGATGGCTACGATGATGAAATCCGGTGTTCCGATCGTCTCGGCACTGGAGATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGACGGGATTCGCGCCGACATCGAGGGCGGTTCTTCGTTGAACGAGG
CGATTAGCCGTCACCCTGTCCAGTTCGACGAGCTCTACCGCAATCTGGTCCGCGCCGGTGAAAGCGCCGGTGTGCTGGAA
ACGGTGCTGGACACGATCGCTTCCTACAAGGAGAACATCGAAGCACTGAAGGGCAAGATCAAGAAGGCCCTGTTCTACCC
GGCCATGGTGCTGGTGGTGGCCTTCCTGGTCAGCACCATCCTGCTGGTCTGGGTGGTGCCGCAGTTCGAGGAGGTATTCA
AGAGCTTCGGTGCCGACCTGCCGGCCTTCACCCAGATGGTGGTCAACCTGTCCCGCTTCATGGTGTCGTGGTGGTGGCTG
ATAGCCATCGTCGTGATCGGAGCGGTGGTGGCCATCGCCATGACCTACCGGCGTTCGGAGAAGATGCAGCACACGGTCGA
CCGGCTGGTGCTGAAGGTGCCGGTGATCGGCCAGATCATGCATAACAGCTCGATTGCCCGTTTCGCCCGCACCACGGCTG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCTGGCGCCACCGGCAACAAGGTCTATGGCGAA
GCCGTCCTGCGCATGCGCGACGACGTCTCGGTCGGCTACCCGGTCAACATGGCCATGAAGCAGCTGAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCGGGCGCCCTGGACGCCATGTTGTTCAAGGTGGCTGAATACTACG
AGCAGGAAGTGAACAATGCCGTGGATGCCTTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTC
GGTGGCTTGGTCATCGCGATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Legionella pneumophila strain ERS1305867

52.381

95.227

0.499
  pilC Acinetobacter baylyi ADP1

50.985

96.897

0.494
  pilC Acinetobacter baumannii D1279779

51.134

94.749

0.484
  pilG Neisseria gonorrhoeae MS11

43.325

94.749

0.411
  pilG Neisseria meningitidis 44/76-A

43.073

94.749

0.408
  pilC Vibrio cholerae strain A1552

41.133

96.897

0.399
  pilC Vibrio campbellii strain DS40M4

40.648

95.704

0.389