Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   JJN14_RS01345 Genome accession   NZ_CP067992
Coordinates   277477..279465 (+) Length   662 a.a.
NCBI ID   WP_000749582.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 272477..284465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS01315 (JJN14_01315) - 272878..273108 (+) 231 WP_063612229.1 DUF1146 family protein -
  JJN14_RS01320 (JJN14_01320) murA 273132..274415 (+) 1284 WP_201058709.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JJN14_RS01325 (JJN14_01325) - 274408..274596 (+) 189 WP_004241151.1 DNA-directed RNA polymerase subunit beta -
  JJN14_RS01330 (JJN14_01330) endA 274635..275459 (+) 825 WP_042750033.1 DNA-entry nuclease EndA Machinery gene
  JJN14_RS01335 (JJN14_01335) - 275615..276946 (+) 1332 WP_201058710.1 hemolysin family protein -
  JJN14_RS01345 (JJN14_01345) amiA3 277477..279465 (+) 1989 WP_000749582.1 peptide ABC transporter substrate-binding protein Regulator
  JJN14_RS01350 (JJN14_01350) amiC 279532..281028 (+) 1497 WP_000759916.1 ABC transporter permease Regulator
  JJN14_RS01355 (JJN14_01355) amiD 281028..281954 (+) 927 WP_049510796.1 oligopeptide ABC transporter permease OppC Regulator
  JJN14_RS01360 (JJN14_01360) amiE 281963..283030 (+) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  JJN14_RS01365 (JJN14_01365) amiF 283041..283967 (+) 927 WP_042750043.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72530.86 Da        Isoelectric Point: 4.9296

>NTDB_id=526137 JJN14_RS01345 WP_000749582.1 277477..279465(+) (amiA3) [Streptococcus mitis strain S022-V7-A3]
MKKSQVLAVAGATLLASGVLAACSNTSSNNAKLAKDYQYVYQTDPETLDYIVSNIDSTSFVTTNAVDGLLANDKYGNLVP
SIAESWTVSKDGLTYTYKIRKDAKWVTAEGEEYAPVTAKDFVTGLKHAVDGKSKGLSIVSSSIKGLEAYIKGETSDFSTV
GVKALDDQTLEYTLNQPETFWNDKTTSGVLMPVNEEFLTSKGEGFGAPTDANSILYNGPFVLKSVTPKSSIEMAKNDAYW
DKENVKIENVKFTFWDGKDQDVIAKGFADGQYSKARIFPTSSTYEKYAADFKDNIYFNEPGAGVATVSLNYGRTTYNHTA
KTSDAQKTSTQKALLNKEFRQALNFAVDRNSYSAQTNGTDGAAVAIRNTFAPYNLQVGKKTFGELVQDSLAKTNSSTWSN
VSLADSQNGLYNEEKAKEVFAKAKSSLQAEGVEFPIHLDALVIQESTAVVNRVQSLKQSIEKVLGSDNVVVDLQQMTQAE
ALPISFSAPTAKEQDWDIHTLLGWNPDYQDPSTFLDQFVLKGGSTRLYLGIDQNTDASVVSKLGLADYGKLLDDANSENQ
DVQKRYEKYAVAQAWLTDNALTIPVMASPKETAVSYVSKVLPFSSSYSVAGLKGENSGYLKYTEVGEKAITKEEYEKARE
KWLKEKTESNEKAQKELASHVK

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=526137 JJN14_RS01345 WP_000749582.1 277477..279465(+) (amiA3) [Streptococcus mitis strain S022-V7-A3]
ATGAAAAAAAGTCAAGTGCTTGCTGTAGCGGGAGCTACCTTATTAGCGTCAGGAGTTCTAGCTGCGTGTTCAAACACTAG
TTCAAATAATGCTAAACTAGCAAAAGATTACCAATATGTTTATCAAACAGATCCAGAAACCTTGGATTATATCGTCAGCA
ATATCGATTCTACATCATTCGTCACAACAAATGCTGTAGATGGTTTGTTGGCTAATGATAAATATGGTAACCTGGTTCCT
TCTATTGCTGAATCATGGACAGTTTCAAAAGATGGTTTGACTTATACCTATAAAATCCGTAAGGATGCTAAATGGGTGAC
AGCAGAGGGAGAAGAATACGCTCCTGTAACTGCTAAAGACTTCGTTACTGGTTTGAAACACGCCGTAGATGGAAAATCAA
AAGGACTTTCAATCGTTAGCTCTTCTATTAAGGGATTAGAAGCCTATATCAAGGGTGAAACAAGCGATTTTTCAACCGTT
GGAGTAAAAGCGCTTGATGATCAAACACTAGAATATACCTTGAACCAGCCAGAAACTTTCTGGAATGACAAGACCACTAG
TGGTGTTTTGATGCCGGTTAATGAAGAATTCTTAACTTCAAAAGGGGAAGGTTTTGGTGCCCCAACAGATGCTAACTCTA
TTCTTTATAACGGTCCATTTGTCTTAAAATCTGTAACTCCAAAATCATCTATCGAGATGGCTAAAAATGATGCTTACTGG
GACAAAGAAAATGTAAAAATTGAGAACGTTAAGTTCACTTTCTGGGATGGTAAGGACCAAGATGTGATTGCCAAAGGTTT
TGCCGATGGTCAATATAGCAAGGCTCGTATTTTCCCTACAAGTTCTACATATGAAAAATATGCAGCTGACTTCAAAGATA
ACATTTACTTTAATGAACCAGGAGCGGGTGTTGCAACTGTCAGCTTGAACTATGGCCGTACAACCTATAACCACACTGCC
AAAACAAGTGATGCCCAAAAGACATCTACTCAGAAAGCATTGCTAAACAAGGAATTCCGTCAAGCCTTGAACTTTGCGGT
CGATCGCAATTCTTACTCAGCTCAAACAAATGGTACTGATGGAGCTGCAGTAGCCATCCGTAATACGTTTGCACCATATA
ATCTTCAAGTTGGTAAGAAAACATTTGGTGAATTGGTACAAGATAGCTTGGCTAAGACAAATTCTTCTACTTGGTCAAAC
GTGTCTCTAGCAGATTCTCAAAATGGCCTTTACAATGAAGAAAAAGCTAAAGAAGTCTTTGCTAAAGCAAAATCAAGCCT
ACAAGCTGAAGGTGTTGAATTCCCAATCCACTTGGATGCCTTGGTTATCCAAGAATCAACAGCGGTTGTAAACCGTGTTC
AATCATTGAAACAATCAATTGAAAAAGTATTGGGTTCAGATAATGTTGTTGTAGACTTACAACAAATGACTCAAGCGGAA
GCTTTACCAATTTCATTTAGTGCTCCAACAGCTAAAGAGCAAGACTGGGATATCCATACCTTGCTAGGATGGAACCCTGA
CTATCAAGATCCTTCTACTTTCTTGGATCAATTCGTCCTTAAGGGAGGAAGCACTCGTCTTTACCTTGGAATTGACCAAA
ACACAGATGCATCAGTAGTAAGCAAACTTGGTTTAGCTGACTATGGAAAATTACTTGATGACGCAAACAGCGAAAACCAA
GATGTTCAAAAACGTTATGAAAAATACGCGGTGGCACAAGCTTGGTTGACTGACAATGCTTTGACAATTCCAGTAATGGC
TTCTCCTAAAGAAACAGCCGTTTCATATGTTTCAAAAGTTCTACCATTTAGCTCTTCATATTCTGTAGCCGGCCTTAAAG
GTGAAAATTCAGGATACTTGAAGTACACTGAAGTTGGTGAAAAAGCAATCACCAAAGAAGAGTATGAAAAAGCTCGTGAA
AAATGGTTGAAAGAAAAGACTGAGTCAAACGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.819

100

0.55
  amiA3 Streptococcus thermophilus LMG 18311

54.518

100

0.547
  amiA Streptococcus salivarius strain HSISS4

53.916

100

0.541