Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   JJN14_RS01365 Genome accession   NZ_CP067992
Coordinates   283041..283967 (+) Length   308 a.a.
NCBI ID   WP_042750043.1    Uniprot ID   A0A081QWW6
Organism   Streptococcus mitis strain S022-V7-A3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 278041..288967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS01350 (JJN14_01350) amiC 279532..281028 (+) 1497 WP_000759916.1 ABC transporter permease Regulator
  JJN14_RS01355 (JJN14_01355) amiD 281028..281954 (+) 927 WP_049510796.1 oligopeptide ABC transporter permease OppC Regulator
  JJN14_RS01360 (JJN14_01360) amiE 281963..283030 (+) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  JJN14_RS01365 (JJN14_01365) amiF 283041..283967 (+) 927 WP_042750043.1 ATP-binding cassette domain-containing protein Regulator
  JJN14_RS01370 (JJN14_01370) - 284381..285259 (-) 879 WP_049510798.1 LysR family transcriptional regulator -
  JJN14_RS01375 (JJN14_01375) - 285387..285737 (-) 351 WP_049492830.1 helix-turn-helix domain-containing protein -
  JJN14_RS01380 (JJN14_01380) - 286010..287635 (+) 1626 WP_061590049.1 malolactic enzyme -
  JJN14_RS01385 (JJN14_01385) - 287838..287957 (+) 120 Protein_238 IS630 family transposase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34805.81 Da        Isoelectric Point: 6.3162

>NTDB_id=526141 JJN14_RS01365 WP_042750043.1 283041..283967(+) (amiF) [Streptococcus mitis strain S022-V7-A3]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=526141 JJN14_RS01365 WP_042750043.1 283041..283967(+) (amiF) [Streptococcus mitis strain S022-V7-A3]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTTTCGCTTGTAGGTGAGTCAGGAAGTGGGAAAACAACTATTGGTCGTG
CCATCATCGGTCTTAATGATACAAGTAATGGGGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCCCGTGAA
CAAGCTGCGGAATTGATTCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCAAGTTTGAATGAACGTGCCACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCATCATTTGTTCAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCGGATGAGCCCATTTCAGCCTTGGACGTTTCTGTGCGTGC
TCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAACTTGGTTTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCTGAAACAGAAGAATTGTTTAAC
AATCCAATTCATCCATATACTCAAGCCTTGCTTTCAGCGGTACCTATCCCAGATCCAATCTTGGAACGCAAGAAGGTATT
GAAAGTATATGATCCAGATCAACATGATTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCAGAATTGGCACGTTACCAAAAAGGATTAAACTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081QWW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.902

99.026

0.851
  amiF Streptococcus salivarius strain HSISS4

85.902

99.026

0.851
  amiF Streptococcus thermophilus LMD-9

85.574

99.026

0.847