Detailed information NTG0526141

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K6128_RS14875
• Genome accession: NZ_CP082100
• Coordinates: 3046196..3047188 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MS15047
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3041196..3052188

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6128_RS14855 (K6128_14745)	otnK	3041971..3043233 (+)	1263	WP_086676129.1	3-oxo-tetronate kinase	-
K6128_RS14860 (K6128_14750)	ygbL	3043230..3043868 (+)	639	WP_001278994.1	aldolase	-
K6128_RS14865 (K6128_14755)	ygbM	3043873..3044649 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
K6128_RS14870 (K6128_14760)	ygbN	3044738..3046102 (+)	1365	WP_061350705.1	GntP family transporter	-
K6128_RS14875 (K6128_14765)	rpoS	3046196..3047188 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
K6128_RS14880 (K6128_14770)	nlpD	3047251..3048345 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
K6128_RS14885 (K6128_14775)	pcm	3048530..3049156 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
K6128_RS14890 (K6128_14780)	surE	3049150..3049911 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
K6128_RS14895 (K6128_14785)	truD	3049892..3050941 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
K6128_RS14900 (K6128_14790)	ispF	3050938..3051417 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K6128_RS14905 (K6128_14795)	ispD	3051417..3052127 (-)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=526141 K6128_RS14875 WP_000081550.1 3046196..3047188(-) (rpoS) [Escherichia coli strain MS15047]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=526141 K6128_RS14875 WP_000081550.1 3046196..3047188(-) (rpoS) [Escherichia coli strain MS15047]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715