Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   JJN14_RS01355 Genome accession   NZ_CP067992
Coordinates   281028..281954 (+) Length   308 a.a.
NCBI ID   WP_049510796.1    Uniprot ID   A0A178K7Y6
Organism   Streptococcus mitis strain S022-V7-A3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 276028..286954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS01345 (JJN14_01345) amiA3 277477..279465 (+) 1989 WP_000749582.1 peptide ABC transporter substrate-binding protein Regulator
  JJN14_RS01350 (JJN14_01350) amiC 279532..281028 (+) 1497 WP_000759916.1 ABC transporter permease Regulator
  JJN14_RS01355 (JJN14_01355) amiD 281028..281954 (+) 927 WP_049510796.1 oligopeptide ABC transporter permease OppC Regulator
  JJN14_RS01360 (JJN14_01360) amiE 281963..283030 (+) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  JJN14_RS01365 (JJN14_01365) amiF 283041..283967 (+) 927 WP_042750043.1 ATP-binding cassette domain-containing protein Regulator
  JJN14_RS01370 (JJN14_01370) - 284381..285259 (-) 879 WP_049510798.1 LysR family transcriptional regulator -
  JJN14_RS01375 (JJN14_01375) - 285387..285737 (-) 351 WP_049492830.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34540.58 Da        Isoelectric Point: 9.8154

>NTDB_id=526139 JJN14_RS01355 WP_049510796.1 281028..281954(+) (amiD) [Streptococcus mitis strain S022-V7-A3]
MSTIDKEKFQFVKRDDFASEAIDAPAYSYWGSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAQHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=526139 JJN14_RS01355 WP_049510796.1 281028..281954(+) (amiD) [Streptococcus mitis strain S022-V7-A3]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAGCCATTGATGCGCCAGCTTA
TTCATACTGGGGTTCAGTGTTTAGACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATTTTGGTAGCCATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAATGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTCAGCATTGGTTCGGTACAGACAGTAACGGTAAATCTCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCTATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTCTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGCGTGATGATGGAAGTTTATAACGTCATCTCAAACATCCCATCTCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGTGTAACAACATGGATTGGGATTGCCTTCAT
GATTCGTGTGCAAATCTTGCGTTATCGTGACTTGGAATACAACTTGGCGTCACGTACCTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAACATCATGCCACAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTGCCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCAGATTATTC
ACAAAACGTAACAACTAATGCTTACTTGTTCTGGATTCCATTGACAACTCTTGTCTTGGTATCCTTATCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A178K7Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.117

100

0.831
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818