Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   JJN14_RS01350 Genome accession   NZ_CP067992
Coordinates   279532..281028 (+) Length   498 a.a.
NCBI ID   WP_000759916.1    Uniprot ID   A0A387B3P8
Organism   Streptococcus mitis strain S022-V7-A3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 274532..286028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS01330 (JJN14_01330) endA 274635..275459 (+) 825 WP_042750033.1 DNA-entry nuclease EndA Machinery gene
  JJN14_RS01335 (JJN14_01335) - 275615..276946 (+) 1332 WP_201058710.1 hemolysin family protein -
  JJN14_RS01345 (JJN14_01345) amiA3 277477..279465 (+) 1989 WP_000749582.1 peptide ABC transporter substrate-binding protein Regulator
  JJN14_RS01350 (JJN14_01350) amiC 279532..281028 (+) 1497 WP_000759916.1 ABC transporter permease Regulator
  JJN14_RS01355 (JJN14_01355) amiD 281028..281954 (+) 927 WP_049510796.1 oligopeptide ABC transporter permease OppC Regulator
  JJN14_RS01360 (JJN14_01360) amiE 281963..283030 (+) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  JJN14_RS01365 (JJN14_01365) amiF 283041..283967 (+) 927 WP_042750043.1 ATP-binding cassette domain-containing protein Regulator
  JJN14_RS01370 (JJN14_01370) - 284381..285259 (-) 879 WP_049510798.1 LysR family transcriptional regulator -
  JJN14_RS01375 (JJN14_01375) - 285387..285737 (-) 351 WP_049492830.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55661.16 Da        Isoelectric Point: 9.4223

>NTDB_id=526138 JJN14_RS01350 WP_000759916.1 279532..281028(+) (amiC) [Streptococcus mitis strain S022-V7-A3]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTADKRDNYENTVYERMGYIEYYDTKELQEKAS
QMDASVTVEANDTNKAIYEKYIKQIGHGWTLGEFTESGQFYATREIPIFERVFKFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNINLGDSYPTYANSPVLQVITQGQGQTKTSQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVANYGKDDPYTATESNYQYPSMIASSAVVGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGA
LTFLMALPTIALVYIVRLAGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=526138 JJN14_RS01350 WP_000759916.1 279532..281028(+) (amiC) [Streptococcus mitis strain S022-V7-A3]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCCTTGGTTTCTATCTTCTTAGTAACAACCTTGACCTACACGATTAT
CTATACAATGGTTCCTAGAAAATTGATTTTCAAACAGGATACCAACTATAACAAGATTGCGACAACTGCTGATAAACGTG
ATAACTATGAGAATACCGTTTATGAGCGTATGGGCTATATCGAGTACTACGATACCAAAGAGTTGCAAGAAAAAGCTAGC
CAGATGGATGCTTCTGTAACAGTTGAAGCCAATGACACCAACAAGGCTATCTATGAAAAATACATCAAACAAATCGGTCA
TGGTTGGACCCTGGGAGAATTTACTGAAAGTGGTCAATTCTACGCGACGCGTGAAATCCCGATTTTTGAACGTGTTTTCA
AATTCTATGCTAACTTGATTGACATTGACCATACTAATAAAATTCAAGACCCTGAAAATCCAGACTTGAAACGTTACCTT
CGCTTTGAAAATGATCCAGCTATCGGATGGTCCTTGGTCGGTTCAGGAACTAAACACAAATATCTCTTGTACTTCAATAG
TCAGTTCCCGTTTGTGCATCAAAACTTTGTGAACATTAATTTAGGTGACTCTTATCCAACCTATGCTAATAGCCCTGTTT
TACAGGTTATTACTCAGGGACAAGGGCAAACAAAAACGTCTCAAGTTCAGTTCCCAACAGGTAAGAAAACTTCTTCTGTA
AATATTTACTCAAGAACCTACAAGTCACCTAGTCAGGCTGATTCTCGTGAAGTAGCTAACTATGGGAAAGATGACCCATA
TACTGCAACTGAAAGCAACTACCAATATCCTTCTATGATTGCCAGCTCTGCTGTCGTTGGATTGATCGGTTTGGTGATTT
CTTATGCGATTGCCGTGCCACTTGGTTCAGCTATGGCTCGCTTCAAGAATACTTGGATTGATAGCTTTTCAACAGGGGCT
TTGACCTTCTTGATGGCTCTTCCAACAATTGCCTTGGTTTATATCGTTCGTTTGGCTGGTTCTTCAATCGGTTTGCCAGA
TTCATTCCCTATCTTGGGTGCTGGAGATTGGCGTTCGTATGTTTTACCAGCAGTTATCCTTGGTTTGTTGGGTGCTCCTG
GTACAGCCATTTGGATTCGTCGTTATATGATTGACTTACAATCACAGGACTTTGTTCGTTTTGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCTATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCCGTTAT
CGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCCAATAACTCTATGGTCGTAGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACTTCTTTTGGGAGAT
ATTTGGATGACGATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A387B3P8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.506

100

0.765
  amiC Streptococcus thermophilus LMG 18311

76.305

100

0.763
  amiC Streptococcus thermophilus LMD-9

75.904

100

0.759