Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   JJN14_RS01360 Genome accession   NZ_CP067992
Coordinates   281963..283030 (+) Length   355 a.a.
NCBI ID   WP_000159550.1    Uniprot ID   F9HAA0
Organism   Streptococcus mitis strain S022-V7-A3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 276963..288030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS01345 (JJN14_01345) amiA3 277477..279465 (+) 1989 WP_000749582.1 peptide ABC transporter substrate-binding protein Regulator
  JJN14_RS01350 (JJN14_01350) amiC 279532..281028 (+) 1497 WP_000759916.1 ABC transporter permease Regulator
  JJN14_RS01355 (JJN14_01355) amiD 281028..281954 (+) 927 WP_049510796.1 oligopeptide ABC transporter permease OppC Regulator
  JJN14_RS01360 (JJN14_01360) amiE 281963..283030 (+) 1068 WP_000159550.1 ABC transporter ATP-binding protein Regulator
  JJN14_RS01365 (JJN14_01365) amiF 283041..283967 (+) 927 WP_042750043.1 ATP-binding cassette domain-containing protein Regulator
  JJN14_RS01370 (JJN14_01370) - 284381..285259 (-) 879 WP_049510798.1 LysR family transcriptional regulator -
  JJN14_RS01375 (JJN14_01375) - 285387..285737 (-) 351 WP_049492830.1 helix-turn-helix domain-containing protein -
  JJN14_RS01380 (JJN14_01380) - 286010..287635 (+) 1626 WP_061590049.1 malolactic enzyme -
  JJN14_RS01385 (JJN14_01385) - 287838..287957 (+) 120 Protein_238 IS630 family transposase -

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 39491.07 Da        Isoelectric Point: 4.8078

>NTDB_id=526140 JJN14_RS01360 WP_000159550.1 281963..283030(+) (amiE) [Streptococcus mitis strain S022-V7-A3]
MTKEKNVILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGSIDYRGQDL
TALSSHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAKELAIDYMNKVGIPDADRRFDEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSVSETHWAK
TWLLHEDAPKVEKPAVIANLHDKIREKMGFAHLAD

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=526140 JJN14_RS01360 WP_000159550.1 281963..283030(+) (amiE) [Streptococcus mitis strain S022-V7-A3]
ATGACAAAAGAAAAAAATGTAATTTTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTATTGACAGC
CATTCGCGGCGTTTCCCTTGAACTAGTTGAAGGAGAAGTACTAGCCTTGGTAGGTGAGTCAGGATCAGGAAAATCTGTTT
TGACAAAGACCTTCACAGGTATGCTCGAAGAAAATGGTCGCATTGCCCAAGGAAGTATTGACTACCGTGGTCAAGACTTG
ACAGCCTTGTCTTCTCACAAGGATTGGGAACAAATTCGTGGTGCTAAGATTGCGACTATCTTCCAGGACCCAATGACTAG
TCTGGACCCAATTAAAACAATTGGTAGTCAGATTACAGAAGTTATTGTAAAACACCAAGGCAAAACAGCTAAAGAAGCGA
AAGAATTGGCCATTGACTACATGAATAAGGTTGGGATTCCAGATGCAGATAGACGTTTTGATGAATACCCATTCCAATAT
TCTGGAGGGATGCGTCAACGTATCGTTATTGCTATTGCCCTTGCCTGCCGACCTGATGTCTTGATCTGTGATGAGCCAAC
AACTGCCTTGGATGTAACCATCCAAGCACAGATTATTGATTTGCTAAAATCTTTACAAAACGAGTACCATTTCACAACAA
TCTTTATCACCCACGACCTTGGTGTGGTAGCAAGTATTGCAGATAAGGTAGCAGTTATGTATGCAGGAGAAATCGTTGAG
TATGGAACTGTTGAGGAAGTCTTCTATGACCCTCGCCATCCATATACATGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGATCTTTACTCAATCCCAGGAACACCTCCGTCACTTTATACTGACTTGAAAGGGGATGCCTTTGCCT
TGCGTTCAGACTATGCAATGCAGATTGACTTCGAACAAAAAGCTCCTCAATTCTCAGTATCAGAGACGCATTGGGCTAAA
ACTTGGCTTCTTCATGAGGATGCTCCAAAAGTAGAAAAACCAGCTGTGATTGCAAATCTCCACGATAAAATCCGTGAAAA
AATGGGATTTGCCCATCTGGCTGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB F9HAA0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

87.887

100

0.879

  amiE Streptococcus thermophilus LMG 18311

86.197

100

0.862

  amiE Streptococcus thermophilus LMD-9

86.197

100

0.862

  oppD Streptococcus mutans UA159

54.261

99.155

0.538