Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JGR68_RS11450 Genome accession   NZ_CP067113
Coordinates   2440618..2441817 (+) Length   399 a.a.
NCBI ID   WP_199362712.1    Uniprot ID   -
Organism   Luteimonas sp. MC1750     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2430584..2447423 2440618..2441817 within 0


Gene organization within MGE regions


Location: 2430584..2447423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGR68_RS11405 (JGR68_11405) - 2430584..2432356 (+) 1773 WP_199362721.1 tetratricopeptide repeat protein -
  JGR68_RS11410 (JGR68_11410) - 2432409..2433569 (+) 1161 WP_199362720.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  JGR68_RS11415 (JGR68_11415) - 2433649..2434161 (-) 513 WP_199362719.1 acyltransferase -
  JGR68_RS11420 (JGR68_11420) - 2434154..2435050 (-) 897 WP_199362718.1 hypothetical protein -
  JGR68_RS11425 (JGR68_11425) - 2435132..2435854 (-) 723 WP_199362717.1 class I SAM-dependent methyltransferase -
  JGR68_RS11430 (JGR68_11430) - 2435844..2437004 (-) 1161 WP_199362716.1 glycosyltransferase -
  JGR68_RS11435 (JGR68_11435) - 2437001..2437729 (-) 729 WP_199362715.1 methyltransferase domain-containing protein -
  JGR68_RS11440 (JGR68_11440) - 2437726..2438577 (-) 852 WP_199362714.1 glycosyltransferase family 2 protein -
  JGR68_RS11445 (JGR68_11445) pilB 2438710..2440434 (+) 1725 WP_199362713.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JGR68_RS11450 (JGR68_11450) pilC 2440618..2441817 (+) 1200 WP_199362712.1 type II secretion system F family protein Machinery gene
  JGR68_RS11455 (JGR68_11455) pilD 2441821..2442681 (+) 861 WP_199362711.1 A24 family peptidase Machinery gene
  JGR68_RS11460 (JGR68_11460) coaE 2442770..2443408 (+) 639 WP_199362710.1 dephospho-CoA kinase -
  JGR68_RS11465 (JGR68_11465) - 2443436..2443897 (-) 462 WP_199362709.1 hypothetical protein -
  JGR68_RS11470 (JGR68_11470) - 2443894..2444367 (-) 474 WP_199362708.1 hypothetical protein -
  JGR68_RS11475 (JGR68_11475) - 2444364..2445878 (-) 1515 WP_199362707.1 DUF2235 domain-containing protein -
  JGR68_RS11480 (JGR68_11480) - 2445906..2446535 (-) 630 WP_199362706.1 hypothetical protein -
  JGR68_RS11485 (JGR68_11485) - 2446567..2446803 (-) 237 WP_199362705.1 hypothetical protein -
  JGR68_RS11490 (JGR68_11490) - 2446809..2447423 (-) 615 WP_199362704.1 hypothetical protein -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 43174.00 Da        Isoelectric Point: 9.6392

>NTDB_id=525119 JGR68_RS11450 WP_199362712.1 2440618..2441817(+) (pilC) [Luteimonas sp. MC1750]
MAPFVWEGTDKRGKKMKGEQTAKNANLLRAELRRQGITPTVVKAKSKPLLGGAGKTISSKDIAVFSRQLATMIKSGVPIV
QSLEIIANGNKNTRMKAMVDSLRLDLEGGLSIYEAMSKHPVQFDELYRNLVKAGEGAGVLETVLETIANYKENIETLKGK
IKKALFYPATVVAVALLVSSILLVFVVPQFESVFAGFGAELPAFTQLIVAASDFMVAWWWLIVLILGGTAFVAIAAFKRS
PAFQHFVDRMILKVPIIGQIMHNSAIARYARTLATTFAAGVPLVEALGIVAGATGNSVYEKAVLEVQSDVAVGYQLNMSM
KQVNLFPHMVIQMTAIGEEAGALDTMLFKVAEFYEQEVNNAVDALASLIEPLIMVFIGVVVGSMVIGMYLPIFKLAATI

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=525119 JGR68_RS11450 WP_199362712.1 2440618..2441817(+) (pilC) [Luteimonas sp. MC1750]
ATGGCACCGTTCGTATGGGAAGGTACGGACAAGCGCGGGAAGAAGATGAAGGGCGAGCAGACGGCGAAGAATGCCAACCT
GCTGCGCGCCGAACTCCGCCGGCAGGGCATCACGCCCACGGTCGTCAAGGCAAAGTCCAAGCCGCTGCTGGGCGGTGCCG
GGAAAACCATCTCCTCGAAGGACATCGCGGTGTTCAGCCGTCAGCTCGCCACGATGATCAAGTCCGGCGTGCCGATCGTG
CAGTCGCTGGAGATCATCGCGAACGGCAACAAGAACACCCGCATGAAGGCGATGGTCGACAGCCTGCGCCTGGACCTCGA
GGGTGGTCTGTCGATCTACGAGGCGATGAGCAAGCACCCCGTCCAGTTCGACGAGTTGTACCGCAACCTGGTCAAGGCTG
GCGAGGGCGCGGGCGTGCTGGAAACGGTGCTTGAGACCATCGCCAACTACAAGGAAAACATCGAGACGCTGAAGGGCAAG
ATCAAGAAGGCCCTGTTCTACCCCGCCACGGTGGTCGCGGTGGCGCTGCTGGTGAGCTCGATCCTGCTGGTGTTCGTGGT
CCCGCAGTTCGAATCGGTGTTCGCCGGGTTCGGCGCCGAGCTGCCGGCATTCACGCAGCTGATCGTGGCGGCTTCGGACT
TCATGGTCGCCTGGTGGTGGCTCATCGTGCTGATCCTGGGCGGCACCGCATTCGTGGCGATCGCCGCGTTCAAGCGTTCG
CCGGCGTTCCAGCACTTCGTCGACCGGATGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACTCCGCCATCGC
CCGGTATGCGCGCACGCTGGCAACCACCTTCGCGGCCGGCGTGCCGCTGGTCGAAGCGCTGGGCATCGTGGCCGGGGCCA
CCGGCAACTCGGTGTACGAAAAGGCCGTGCTTGAGGTGCAGAGCGACGTCGCCGTTGGTTACCAGCTCAACATGTCGATG
AAGCAGGTCAACCTGTTCCCGCACATGGTCATCCAGATGACGGCCATTGGCGAGGAAGCCGGTGCGCTGGACACGATGCT
GTTCAAGGTGGCGGAATTCTATGAACAAGAGGTCAACAATGCCGTCGACGCGCTGGCGAGCCTGATCGAGCCGCTCATCA
TGGTCTTCATCGGCGTTGTGGTCGGCAGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTCGCCGCCACCATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(65-188)

Type II secretion system (T2SS), protein F (T2SSF)

(270-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.525

99.248

0.521
  pilC Pseudomonas stutzeri DSM 10701

52.02

99.248

0.516
  pilC Acinetobacter baumannii D1279779

50.5

100

0.506
  pilC Acinetobacter baylyi ADP1

50.25

100

0.504
  pilG Neisseria gonorrhoeae MS11

43

100

0.431
  pilG Neisseria meningitidis 44/76-A

42.75

100

0.429
  pilC Vibrio cholerae strain A1552

42

100

0.421
  pilC Vibrio campbellii strain DS40M4

41.147

100

0.414
  pilC Thermus thermophilus HB27

38.025

100

0.386