Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JGE02_RS04250 Genome accession   NZ_CP067042
Coordinates   863241..864482 (+) Length   413 a.a.
NCBI ID   WP_005713299.1    Uniprot ID   A0A7Y7UHQ1
Organism   Lacticaseibacillus rhamnosus strain B6     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 858241..869482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGE02_RS04230 (JGE02_04230) yfmH 859389..860681 (+) 1293 WP_005713292.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  JGE02_RS04235 (JGE02_04235) ymfI 860681..861409 (+) 729 WP_005713294.1 elongation factor P 5-aminopentanone reductase -
  JGE02_RS04240 (JGE02_04240) - 861496..862422 (+) 927 WP_005713296.1 helix-turn-helix domain-containing protein -
  JGE02_RS04245 (JGE02_04245) pgsA 862419..863012 (+) 594 WP_005713297.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JGE02_RS04250 (JGE02_04250) cinA 863241..864482 (+) 1242 WP_005713299.1 competence/damage-inducible protein A Machinery gene
  JGE02_RS04255 (JGE02_04255) recA 864534..865586 (+) 1053 WP_005688187.1 recombinase RecA Machinery gene
  JGE02_RS04260 (JGE02_04260) rny 866315..867886 (+) 1572 WP_005684479.1 ribonuclease Y -
  JGE02_RS04265 (JGE02_04265) - 867975..868631 (-) 657 WP_087942809.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44456.12 Da        Isoelectric Point: 7.2504

>NTDB_id=524576 JGE02_RS04250 WP_005713299.1 863241..864482(+) (cinA) [Lacticaseibacillus rhamnosus strain B6]
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLAEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=524576 JGE02_RS04250 WP_005713299.1 863241..864482(+) (cinA) [Lacticaseibacillus rhamnosus strain B6]
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATTACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCAAGCTATCATCAACAGGTTGTTGGGGATAACGCAAAACGACTGGCTGACGCGATAA
GTTTGGCTGAACAACGCAGTGATATCGTTATTTTGATTGGCGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGACGCTATGGCCAAGTTGGCGGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCTTGCAAGCGATGTATCCCCAAGGCGCAATCGTATTGGCCAATCGTGTCGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCGATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAGGAAGTTTTGGAAAGTCGCGTGATGCGCTTCTTTGG
TATCGGCGAATCGCAACTTGTGACAGACTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCGAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGTCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCCCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGTCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CGGGAGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATCGATGCT
CGTCAGCTAGCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCAGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCACAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y7UHQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

52.019

100

0.53
  cinA Streptococcus mitis NCTC 12261

52.019

100

0.53
  cinA Streptococcus pneumoniae TIGR4

51.544

100

0.525
  cinA Streptococcus pneumoniae R6

51.069

100

0.521
  cinA Streptococcus pneumoniae Rx1

51.069

100

0.521
  cinA Streptococcus mutans UA159

51.442

100

0.518
  cinA Streptococcus pneumoniae D39

50.831

100

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

44.66

99.758

0.446
  cinA Streptococcus suis isolate S10

41.799

91.525

0.383