Detailed information NTG0524037

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J6O44_RS05335
• Genome accession: NZ_CP081782
• Coordinates: 1091990..1092982 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 0H26
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1086990..1097982

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J6O44_RS05305 (J6O44_05290)	ispD	1087051..1087761 (+)	711	WP_000246137.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J6O44_RS05310 (J6O44_05295)	ispF	1087761..1088240 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J6O44_RS05315 (J6O44_05300)	truD	1088237..1089286 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
J6O44_RS05320 (J6O44_05305)	surE	1089267..1090028 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
J6O44_RS05325 (J6O44_05310)	pcm	1090022..1090648 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
J6O44_RS05330 (J6O44_05315)	nlpD	1090833..1091927 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
J6O44_RS05335 (J6O44_05320)	rpoS	1091990..1092982 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
J6O44_RS05340 (J6O44_05325)	ygbN	1093076..1094440 (-)	1365	WP_000104466.1	GntP family transporter	-
J6O44_RS05345 (J6O44_05330)	ygbM	1094529..1095305 (-)	777	WP_001136936.1	HPr family phosphocarrier protein	-
J6O44_RS05350 (J6O44_05335)	ygbL	1095310..1095948 (-)	639	WP_001278994.1	aldolase	-
J6O44_RS05355 (J6O44_05340)	otnK	1095945..1097207 (-)	1263	WP_000590398.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=524037 J6O44_RS05335 WP_000081550.1 1091990..1092982(+) (rpoS) [Escherichia coli strain 0H26]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=524037 J6O44_RS05335 WP_000081550.1 1091990..1092982(+) (rpoS) [Escherichia coli strain 0H26]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715