Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JH297_RS16560 Genome accession   NZ_CP066995
Coordinates   3767672..3769066 (+) Length   464 a.a.
NCBI ID   WP_274497633.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 33-4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3762729..3776178 3767672..3769066 within 0


Gene organization within MGE regions


Location: 3762729..3776178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH297_RS16535 (JH297_16500) - 3762729..3763031 (-) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -
  JH297_RS16540 (JH297_16505) - 3763035..3763445 (-) 411 WP_029217117.1 DNA-binding protein -
  JH297_RS16545 (JH297_16510) sucD 3763549..3764424 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  JH297_RS16550 (JH297_16515) sucC 3764449..3765618 (-) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  JH297_RS16555 (JH297_16520) - 3765852..3767462 (+) 1611 WP_040940804.1 HAMP domain-containing sensor histidine kinase -
  JH297_RS16560 (JH297_16525) pilR 3767672..3769066 (+) 1395 WP_274497633.1 sigma-54 dependent transcriptional regulator Regulator
  JH297_RS16565 (JH297_16530) pilB 3769484..3771217 (-) 1734 WP_274497634.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH297_RS16570 (JH297_16535) - 3771257..3771667 (-) 411 WP_274316877.1 pilin -
  JH297_RS16575 (JH297_16540) - 3771756..3772172 (-) 417 WP_227971328.1 pilin -
  JH297_RS16580 (JH297_16545) pilC 3772598..3773800 (+) 1203 WP_227971345.1 type II secretion system F family protein Machinery gene
  JH297_RS16585 (JH297_16550) - 3773807..3774670 (+) 864 WP_129588889.1 A24 family peptidase -
  JH297_RS16590 (JH297_16555) coaE 3774684..3775307 (+) 624 WP_040940796.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50306.69 Da        Isoelectric Point: 6.4414

>NTDB_id=524035 JH297_RS16560 WP_274497633.1 3767672..3769066(+) (pilR) [Xanthomonas campestris pv. campestris strain 33-4]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLSDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTHSALDALDTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=524035 JH297_RS16560 WP_274497633.1 3767672..3769066(+) (pilR) [Xanthomonas campestris pv. campestris strain 33-4]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CGGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATTACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCACCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTGGCCCGCACCATCCACGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTCCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTAGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGAGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCACGGCCGCCCGATTCCGCTGCTGACCCATTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCTGCCTCCTCCGCCCTGCCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAAACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489