Detailed information NTG0523866

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: JH258_RS15940
• Genome accession: NZ_CP066983
• Coordinates: 3606233..3607435 (+)
• Length: 400 a.a.
• NCBI ID: WP_227971345.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. campestris strain 27-6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3601233..3612435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JH258_RS15920 (JH258_15840)	pilR	3601307..3602701 (+)	1395	WP_042594919.1	sigma-54 dependent transcriptional regulator	Regulator
JH258_RS15925 (JH258_15845)	pilB	3603119..3604852 (-)	1734	WP_227971327.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JH258_RS15930 (JH258_15850)	-	3604892..3605302 (-)	411	WP_274316877.1	pilin	-
JH258_RS15935 (JH258_15855)	-	3605391..3605807 (-)	417	WP_227971328.1	pilin	-
JH258_RS15940 (JH258_15860)	pilC	3606233..3607435 (+)	1203	WP_227971345.1	type II secretion system F family protein	Machinery gene
JH258_RS15945 (JH258_15865)	-	3607442..3608305 (+)	864	WP_129588889.1	A24 family peptidase	-
JH258_RS15950 (JH258_15870)	coaE	3608319..3608939 (+)	621	WP_129588888.1	dephospho-CoA kinase	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 43582.64 Da
• Isoelectric Point: 10.1730

>NTDB_id=523866 JH258_RS15940 WP_227971345.1 3606233..3607435(+) (pilC) [Xanthomonas campestris pv. campestris strain 27-6]
MSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPIVVKPKPKPLFGAAGKKVTPKDIAFFSRQMATMMKSGVPIV
GALEIIGSGQKNPRMRNMVGQVRTDIEGGSSLHEAISRHPVQFDELYRNLVKAGEGAGVLETVLDTIASYKENIEALKGK
IKKALFYPAMVMAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQLIVNASRFMVVWWWALLVVLIGAIVGFIFAYKRS
PAMQHGMDRLILKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEAAVLRMRDDVSVGYPVNVAM
KQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVGGMVIGMYLPIFKLASVVG

Nucleotide

• Length: 1203 bp

>NTDB_id=523866 JH258_RS15940 WP_227971345.1 3606233..3607435(+) (pilC) [Xanthomonas campestris pv. campestris strain 27-6]
ATGAGTCCGTTTGTCTGGGAAGGGACCGACAAGCGTGGCGTGAAGATGAAAGGGGAGCAGACTGCTCGAAATGCAAACTT
GCTGCGGGCCGAGTTGCGCCGCCAAGGCATCACCCCGATAGTGGTGAAGCCTAAGCCGAAACCGCTCTTCGGCGCAGCAG
GCAAGAAGGTCACCCCCAAGGACATCGCTTTTTTCAGCAGACAGATGGCGACGATGATGAAGTCTGGCGTGCCCATCGTT
GGAGCGCTGGAAATCATTGGCAGCGGCCAGAAAAATCCGCGTATGCGGAACATGGTCGGTCAAGTTCGCACCGACATCGA
GGGCGGCTCTTCGCTGCACGAGGCTATTAGCAGGCACCCTGTCCAGTTCGATGAGCTTTATCGAAATCTTGTCAAGGCGG
GCGAAGGCGCTGGCGTCTTGGAAACGGTGCTCGATACCATTGCTTCTTACAAAGAAAACATCGAAGCACTGAAAGGCAAG
ATCAAGAAGGCATTGTTTTATCCCGCCATGGTGATGGCAGTCGCCTTACTTGTCAGCTCCATCCTTTTGATTTGGGTAGT
CCCACAGTTTGAGGACGTCTTCAAAGGATTCGGGGCAGAACTTCCTGCCTTCACTCAGCTGATCGTGAATGCATCACGTT
TTATGGTGGTGTGGTGGTGGGCCCTTTTGGTTGTCCTGATTGGAGCAATCGTAGGTTTTATTTTTGCTTACAAACGCTCT
CCGGCAATGCAGCACGGGATGGACAGACTGATTCTTAAAGTGCCGATCATTGGTCAGATCATGCACAACAGCTCCATTGC
CCGCTTTGCTAGAACCACCGCTGTAACATTTAAGGCTGGTGTACCGCTTGTTGAAGCACTCAGCATCGTTGCCGGCGCAA
CAGGCAACTCGGTCTACGAGGCTGCAGTCCTGCGCATGCGCGACGACGTGTCCGTGGGCTACCCGGTCAACGTGGCGATG
AAGCAGGTCAACCTGTTCCCGCACATGGTGGTACAGATGACCGCCATCGGCGAAGAGGCCGGCGCCTTGGATGCAATGCT
GTTCAAAGTTGCCGAGTACTTCGAGCAAGAGGTCAACAATGCGGTTGATGCGCTGAGCAGCCTGATCGAACCCCTCATCA
TGGTGTTCATTGGTACCATCGTCGGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGA
TAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (65-188)

• Type II secretion system (T2SS), protein F (T2SSF) (269-391)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Acinetobacter baylyi ADP1	52.5	100	0.525
pilC	Pseudomonas stutzeri DSM 10701	52.513	99.5	0.523
pilC	Legionella pneumophila strain ERS1305867	51.768	99	0.513
pilC	Acinetobacter baumannii D1279779	50.5	100	0.505
pilG	Neisseria gonorrhoeae MS11	43.216	99.5	0.43
pilG	Neisseria meningitidis 44/76-A	42.714	99.5	0.425
pilC	Vibrio cholerae strain A1552	41	100	0.41
pilC	Vibrio campbellii strain DS40M4	39.295	99.25	0.39